3307 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Arang Rhie)● PanGenie – algorithm that leverages a pangen...1034 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in an...2993 days ago
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Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of pla...1962 days ago
Genome Assembly Tools and Software - PART2 !!
...large genomes in reasonable time with modest computing resources. Our evaluation using three small real paired...1.0.1 – Assembly Analysis FrameworkGAEMR (Genome Assembly Evaluation Metrics and Reportin) is a co...2728 days ago
Awesome perl frameworks, libraries and software - PART 4
...nting TaskPaper documents compactly for inserting into a "Junior" sized planner. ccurtsinger/stabilizer - Stabilizer: Rigorous Performance Evaluation zrlram/afterglow - grap...2537 days ago
List of In-silico Binding Site Prediction Tools
...oms, i.e. including their radii). PocketPicker: http://gecco.org.chemie.uni-frankfurt.de/pocketpicker/index.html Background: Identification and evaluation of surface binding-pockets an...3787 days ago
Commercial and public next-gen-seq (NGS) software
...ce alignment of paired-end and single-end Illumina reads. Uses a Needleman-Wunsch algorithm. Can support Bis-Seq. Commercial. Available free for evaluation, educational use and for use...3562 days ago
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Pack a perl program with their dependencies on Ubuntu !
...T Exam is both the question paper & answer key is released... Evaluation of genome assembly software based on long readsBy BioStar 409 days ago Evaluationgenomeassemblysoftwarelongread...1554 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing studies for exploring complex and Mendelian diseases. A large number of in silico tools have been employed for the task of pathogenicity prediction, including PolyPhen‐2, SIFT,...Tags: Evaluation, Tools, Predict, Missense, Variants, Hindered, Circularity
2246 days ago
Comment on "Short-read assembly using Spades !"
..._reads.fastq" are the forward and reverse reads in FASTQ format. Evaluation of assembly: After running SP...sing SPAdes. However, the specific parameters used for SPAdes and the evaluation tools may vary depending on t...458 days ago
Comment on "EFS: an ensemble feature selection tool implemented as R-package and web-application"
A review of ensembles for feature selection is described. Current state-of-the-art is provided. Types of ensembles, combination methods and evaluation measures are described. Some ch...1602 days ago