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Useful Publications and Websites for Deep Sequencing Data Analysis
...el species. Peterson et al, PLoS One 7(5):e37135, . 2012. Full Text Imputation of unordered markers and the impact on genomic selection accuracy. Rutkowski et al, G3 3(3):427-39, 2...3803 days ago
List of bioinformatics open source projects/software.
...lograms, Substitution models) UGENE integrated bioinformatics tools Visomics bioinformatics tools for omics data Genome Analysis Toolkit 1.0 (GATK 1.0) a software package to a...3780 days ago
List of In-silico Binding Site Prediction Tools
...st it can be used on a large scale level (PDB size for instance). If you use fpocket for publication, please cite : Vincent Le Guilloux, Peter Schmidtke and Pierre Tuffery, "Fpocket...3767 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of Bioresources and Sustainable Development (IBSD),...2594 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...requires BAM files (aligned with GATK) Reference Genome: indexed F...de a reference is needed for both GATK and BWA and a SNP (dbSNP!) da...SNV-PPILP Description: Refines GATK’s Unified Genotyper SNV...n. Input: Maq, gff, CASAVA, VCF, GATK bed, custom Output: “d...2932 days ago
Awesome perl frameworks, libraries and software - PART 1
...ritten in Perl perseo22/pacmanager - Perl/GTK Gnome SSH GUI on steroids. Co...so depends on freely available software, namely HTK, srilm and sclite. masak/web...l - Marco Polo DNS Daemon kevinphilp/Perl-gtk3-Tutorial - Some notes o...2513 days ago
Tools for bacterial whole genome annotation
...3.0 and is accessible at: http://www.cbrc.kaust.edu.sa/BEACON/. BlastKOLA: Assigns K numbers to the...interfaces to this server and can be executed in an interactive mode. BlastKOALA is suitable for annotatin...2355 days ago
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