3982 days ago
BBTools for bioinformatician !
...CTTG Note: For BBMerge with micro-RNA, you need to add the flag mininsert=17. The default is 35, which is too long for micro-RNA libraries. Identifying adapter...2313 days ago
1134 days ago
3040 days ago
Bio++ : C Language libraries for your biological need
...r you. Bio++ 1.9.0 is available with amazing libraries that can help you to solve ap...logical programmers are ready to use the C++ libraries of biology. These library are...from a file or command lineetc. Some of the libraries are under development that wi...3990 days ago
Genome Assembly Tools and Software - PART2 !!
...used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Other features include support for multiple libraries and an option to estimate ins...2728 days ago
3990 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...nalyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Aird et al, Genome Biology 1...5, 2009 PubMedCentral Cost-effective, high-throughput DNA sequencing libraries for multiplexed target captur...3821 days ago
High Density Sheep SNP Genotyping Chip released!!!
...that target single nucleotide polymorphisms (SNPs). More than 18,000 of these markers were discovered through sequencing reduced representation libraries with the Illumina Genome Anal...3939 days ago
2413 days ago
Bioinformatics @ TATA MEMORIAL CENTRE, NAVI MUMBAI
...I MUMBAI – 410210 No. ACTREC/Advt./ 72 /2013 WALK IN INTERVIEW 1. JRF* Genome-wide RNAi screen with human pooled tyrosine kinase shRNA libraries in head and neck squamous cal...3884 days ago
Internship in Computational Biology
...ripting language (Perl, Python...), a basic knowledge of MySQL or any relational database management system. Knowledge in biological programming libraries (BioPython, BioPerl, BioRuby....3573 days ago
2186 days ago
Install Parrot Virtual Machine !
...done. init::optimize - Enable optimization..................................no. inter::shlibs - Determine flags for building shared libraries.....-fPIC. inter::libparrot...1579 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3568 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a script written in Perl that will assist you with your MySQL configuration and make recommendations for increased performance and stability. kraih/mojo - Mojolicious - Perl...Tags: Awesome, perl, frameworks, libraries, software
2531 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exact repeat somewhere, reads mapping to it will be mapped ambiguously. But if you want to determi...Tags: BBSplit, Read, Binning, Tool, Metagenomes, Contaminated, Libraries
2356 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...a list of all “perfect” reads. This is reads that have a perfect map to the reference. Reapr is finicky though, and can’t use libraries with different read lengths,...1379 days ago
2561 days ago