Computer simulation of genetic mechanism !!
...l to generate data of related sequences along a given phylogeny, taking into account user defined system of neighbourhoods and instantaneous rate matrices. http://www.cibiv.at/software...3019 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...ting very large grids. Input parameters' arguments may be specified in separate files. This is particularly convenient when specifying large matrices. Many adjustments have b...2817 days ago
2506 days ago
Bio++ : C Language libraries for your biological need
...entries. Phylogenetic reconstuction methods Parsimony (NNI)Distance matrices estimation and I/O to files i...statistics (mean, var, sd, correlation, information theory)Classes for matrices implementation.Linear algebra...3991 days ago
Awesome perl frameworks, libraries and software - PART 3
...mpleTable perl distribution lovelle/perl-disque - Perl client for Disque, an in-memory, distributed job queue leto/math--matrixreal - Matrices of real numbers in Perl Klor...2538 days ago
Phylogenetic for Bioinformatics
...g various groups of organisms (for example, species or populations), which is discovered through molecular sequencing data and morphological data matrices. In other word, Phylogenetics...3990 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...l to generate data of related sequences along a given phylogeny, taking into account user defined system of neighbourhoods and instantaneous rate matrices. http://www.cibiv.at/software...3781 days ago
Conserved Domain Database (CDD) version 3.11 released
...ls. The new version now contains the most recent Pfam release 27. Updates to the Conserved Domain Database include: Position-specific score matrices (PSSMs) have been recomputed...3771 days ago
3349 days ago
3897 days ago
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-W...2949 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
The FindMotif.pl program uses position-specific scoring matrices to search for sequences similar to a consensus sequence. Find more at http://www.people.vcu.edu/~elhaij/IntroBioinf/Notes/PSSM-Perl.html3680 days ago