Results for "depth"

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  • HiCdat

    HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from aligned reads up to in-depth analyses. Importantly, HiCdat is focus...

    3047 days ago

  • CovCal: Coverage / Read Count Calculator

    Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration and genom...

    2208 days ago

  • +19 more Bookmarks

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  • Genome and coverage https://rtsf.natsci.msu.edu/_rtsf/assets/File/depth%20and%20coverage.pdf #Coverage #Genome #Depth #Reads #NGS

    2764 days ago

  • print_fs("~/flowchart/", depth = 4) #Print #FileStructure

    2009 days ago

Opportunity posts

ResearchLabs posts

  • The Mills lab

    ...air analysis) based on abnormally mapped pairs of clone ends; (ii) read-depth analysis, which detects deletions and duplications through analysis of the read depth-of-coverage; (iii) split read...

    3034 days ago

Video

Bio-Scripts

  • Coverage / Depth of reads !

    # get total number of bases covered at MIN_COVERAGE_DEPTH or higher samtools mpileup mapping_result_sorted.bam | awk -v X="${MIN_COVERAGE_DEPTH}" '$4>=X' | wc -l 32876 #...

    2251 days ago

  • Downloading GATK !

    ...Analysis: Tools that count coverage, e.g. depth per allele ASEReadCounte...bam) with pair orientation fields (e.g. F1R2 ). AnnotateVcfWithBamDepth (Interna...

    2117 days ago

  • +6 more Bio-Scripts

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