Comment on "Short-read assembly using Spades !"
...his can be done through a command-line interface or a graphical...tools assess the completeness and accuracy of the assembled gen...ly using SPAdes. However, the specific parameters used for SPAdes an...ols may vary depending on the specific research question and the cha...471 days ago
471 days ago
Comment on "Tools for Sequence translation !"
...upports several genetic codes and can handle multiple sequences...upports several genetic codes and can also perform reverse tran...upports several genetic codes and provides a user-friendly inte...choice of tool depends on the specific requirements of the user, inc...476 days ago
Comment on "Tools for Differential expression analysis"
...ution to model the count data and provides methods for estimati...model to model the count data and provides methods for estimati...a part of the Cufflinks suite and is used for differential expr...choice of tool depends on the specific research question, the type o...476 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...omparison of the genomic structure and gene content of two or more r...enes are genes that are homologous and have a common ancestor, but h...genomes by comparing the location and order of the orthologous gene...s that have been lost or gained in specific lineages, and inferring the e...478 days ago
Comment on "Biological databases !"
NCBI released a set of GATK-specific dbSNP VCF's, with the "chr" attached. Those can be accessed at ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/GATK/.1599 days ago
2154 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
..., deletion, one-end-extend: insertion, deletion). [2(,2,2,2)] -w --band-width[INT] Band width for banded-SW. [10] -b...options: -r --max-out [INT] Maximum number of output records for a specific split read region. [10] -g --...2178 days ago
2192 days ago
Comment on "Comparative genomics educational material and papers bookmarks"
...ch as Cnidaria (jellyfish, corals, hydroids and sea anemones) and Porifera (sponges). However,...different immune gene families in a lineage-specific manner. To investigate h...: Actiniaria), we performed a comprehensive and comparative study using 10 newly s...2789 days ago