Results for "Work Options"

Bio-Scripts

  • Running Transrate !

    ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate...) Documentation at http://hibberdlab.com/transrate USAGE: transrate OPTIONS: --assembly= As...

    2175 days ago

  • Resume the MIRA assembler run !

    mira -r manifest_file Usage: mira [options] manifest_file [manifest_file ...] Options: -c / --cwd= directory Change working directory -r / --resume Resume an interupted assembly -...

    1786 days ago

  • Installing Porechop on Ubuntu !

    ➜ Tools git:(master) ✗ git clone https://github.com/rrwick/Porechop.git Cloning i...rimming them from the ends and splitting reads with internal adapters Main options: -i INPUT, --input INPUT...

    2157 days ago

  • Install Python locally on shared Linux server !

    #Install python to local directory #Firstly, I create a folder in my home directory, download the python source...make && make install #Notice the prefix option, it is mandatory for this to work. T...

    2150 days ago

  • Downloading GATK !

    ...without running it --java-options 'OPTION1[ OPTION2=Y ... ]'...al - pass the given string of options to the...(BETA Tool) SortSam on Spark (works on SAM/BAM/CRAM) SplitNCig...tructural variation discovery workflow on a single sample SvDi...

    2127 days ago

  • Installing nupack3.0.6

    #http://www.nupack.org/downloads/source ➜ tools git:(m...s not guard... [-Wmisleading-indentation] if (options == -1) ^~ read_command...d as if it were guarded by the ‘if’ switch (options) { ^~~~~~ mkdir -p ....

    2078 days ago

  • Collecting arguments with R

    #! /usr/bin/Rscript ## Collect arguments args

    2055 days ago

  • Perl script to delete the adjacent repeats !

    /usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to delete the adjacent repe...ou wanted to trim any number of duplicates down to a single letter, this would work:...

    1602 days ago

  • Installing docker for Bioinformatics on Ubuntu !

    ...35-MT:~/Downloads$ docker Usage: docker [OPTIONS] COMMAND A self-sufficient runtime for containers Options: --config string...r engine image Manage images network Manage networks node Manage Swarm nod...

    1565 days ago

  • Basic docker commands !

    ...all stopped containers - all networks not used by at least one con...---> d34787da52e0 Step 10/12 : WORKDIR home/ ---> Using cache...Plugins: Volume: local Network: bridge host ipvlan macvlan n...init version: fec3683 Security Options: apparmor seccomp P...

    1561 days ago