Results for "Ka"
Bio-Scripts
...-c conda-forge ruby Collecting package metadata (current_repodata....Solving environment: done ## Package Plan ## environment lo...: - ruby The following packages will be downloaded:...5.7 MB The following NEW packages will be INSTALLED: gd...862 days ago
- ...podata source. Collecting package metadata (repodata.json): d...hon=3.6 The following packages will be downloaded:....8 MB The following NEW packages will be INSTALLED: _l...Downloading and Extracting Packages fontconfig-2.12.6 | 22...
862 days ago
- ...o their proper location and create symlinks for the executables. Finally we’d install the devtools and Biocmanager packages from the command line to make installing additional packages easier. We’ve commented ou...
860 days ago
- ...der a BSD 3-clause license. First let’s download and unzip GATK from github. The creators of GATK recommend running GATK through conda which is a package, environment, and dependenc...
848 days ago
- #!/bin/bash #Counting k-mers for different k echo "k,unique,distinct,total" for k in {1..15}; do kat hist -o phiX_$k.hist -m $k phiX.fasta >/dev/null 2>&1 egrep -v '^#' phiX_$k.hist|awk '{if ($1==1) u=$2; d+=$2; t+=$2*$1;}\ END{print "'$k',"u","d","t}' done
831 days ago
- ...ng environment: done ## Package Plan ## environment lo...- conda The following packages will be downloaded:...3.7 MB The following packages will be REMOVED: entr...4-pl526_0 The following packages will be UPDATED: core...
822 days ago
- ...] password for neelam: Reading package lists... Done Building dep...formation... Done The following package was automatically installed...ve it. The following additional packages will be installed: libg...Selecting previously unselected package libgslcblas0:amd64. (Readi...
701 days ago
Conda command to install checkV
...ng environment: done ## Package Plan ## environment lo...checkv The following packages will be downloaded:....9 MB The following NEW packages will be INSTALLED: bi....6.0-py_0 The following packages will be UPDATED: libg...672 days ago
Script to rapid genome clustering based on pairwise ANI
First, create a blast+ database: makeblastdb -in -dbtype nucl -out Next, use megablast from blast+ package to perform all-vs-all blastn of sequences: blastn -query -db -outfm...672 days ago
- (base) [lege@hn1 testVisanu]$ conda create -n pythonENV python=3.10 scipy=1.13.0 astroid babel Channels: - conda-forge - bioconda - defaults Platform: linux-64 Collecting package metadata (repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
29 days ago
