Results for "No"
Bio-Scripts
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda ragout Collecting package metadata (current_repodata.json): done Solving environment: f...1113 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1113 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloa...installed, 0 to remove and 0 not upgraded. Need to get 104 M...ionic/main amd64 libfile-stripnondeterminism-perl all 0.040-1....selected package libfile-stripnondeterminism-perl. Preparing...... Setting up libfile-stripnondeterminism-perl (0.040-1.1~b...
1113 days ago
Install trimmomatic using Conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda trimmomatic Collecting package metadata (current_repodata.json): done Solving environme...1113 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1113 days ago
Bash script to check installed bioinformatics program !
...#echo "enter your package name" # read name dpkg -s $name &> /dev/null if [ $? -ne 0 ] then echo " $name not installed :: Try installing...1105 days ago
Corona variant calling steps !
...ols sort -o results/bam/$basename.sorted.bam results/bam/$basename.aligned.bam bcftools mpileup -O b -o results/bcf/$basename.bcf -f data/ref_genome/sequences.fasta results/bam...1104 days ago
Commandline for paired end reads simulation with BBMap !
...alse, gz=true, maxlen=536670912, writechroms=true, minscaf=1, midpad=500, nodisk=false] Set genScaffold...en=(0-0) subRate=0.0, max=0, len=(0-0) nRate =0.0, max=0, len=(0-0) genome=1 PERFECT_READ_RATIO=0.0...1049 days ago
Commands to transfer files and folder in docker !
#To copy files between host machine and container (execute the commands on host, not inside container): $ docker cp FILE_OR_FOLDER_ON_HOST CONTAINER_ID:/CONTAINER_DIRECTORY #or $ docker cp CONTAINER_ID:FILE_OR_FOLDER_IN_CONTAINER HOST_DIRECTORY1044 days ago
- Lenovo-ideapad-320-15ISK:~/Downloads/MyTools/$ sudo apt i...lowing packages were automatically installed and are no longer required: linux-hea...-2 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 418 k...
1040 days ago
