Results for "Git"
Bio-Scripts
Create random 1000 CNVs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINDEL.simseq.genome.fa -cnv_count 100 -prefix simuCNV [Sun Jan 10 16:24:20 2021] Starting simuG .. [Sun Ja...1239 days ago
Create random 5 inversions in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuCNV.simseq.genome.fa -inversion_count 5 -prefix simuINV [Sun Jan 10 16:30:40 2021] Starting simuG .. [Sun...1239 days ago
Create random 2 translocations in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINV.simseq.genome.fa -translocation_count 2 -prefix simuTRANS [Sun Jan 10 17:12:58 2021] Starting simuG .....1239 days ago
- (JitMetaENV) ➜ wgd git:(master) pip install --user ERROR: You must give...all (see "pip help install") (JitMetaENV) ➜ wgd git:(master) pip install --user ....ctl-2.1.0 wgd-1.2 Then (JitMetaENV) ➜ wgd git:(master) export PATH=$PATH:/h...
1236 days ago
Set up WGD environment using conda !
...eat the conda ENV and install its deps #Follow the steps (base) ➜ wgd git:(master) conda create -n wgd...15.0 sklearn-0.0 threadpoolctl-2.1.0 tornado-6.1 wgd-1.2 (wgd) ➜ wgd git:(master) wgd zsh: correct 'w...1232 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...e steps (wgd) ➜ i-adhore-3.0.01 git:(master) ✗ tar -zxvf i-adhore...01.tar.gz (wgd) ➜ i-adhore-3.0.01 git:(master) ✗ cd i-adhore-3.0.01...adhore-3.0.01/build (wgd) ➜ build git:(master) ✗ ls CMakeCache.txt...target i-visualize (wgd) ➜ build git:(master) ✗ make install [ 8...1232 days ago
- (JitMetaENV) ➜ setu git:(master) ✗ conda install -c bioconda ragout Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen...
1176 days ago
Commandline for paired end reads simulation with BBMap !
(JitMetaENV) ➜ mixedSample git:(main) ✗ /home/urbe/Tools/bbmap/randomreads.sh ref=mixed.fa out=reads_BBMAP250.fq paired interleaved reads=100k length=250 mininsert=400 maxinsert=6...1018 days ago
Installing Covid19 Environment !
...############################################################### | 100% gitpython-3.1.24 | 122 KB...############################################################### | 100% git-2.33.1 | 13.0 MB...951 days ago
- $ pangolin --update #Major update conda activate pangolin git pull conda env update -f environment.yml pip install . re-installs pangolin.
930 days ago
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