1548 days ago
Installing docker for Bioinformatics on Ubuntu !
...l an image or a repository from a registry push Push an image or a repository to a registry rename Rename a container restart Restart one or more containers rm...1537 days ago
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Perl script to find inverted repeats !
...report->next_result()) { my $rm_match = $rm_result->repeat_consensus(); my $rm_class = $rm_result->repeat_class(); my $rm_start = $rm_result->start(); my $rm_end = $rm_resu...449 days ago
R script to covert and export html page to png
# Library library(streamgraph) # Create data: data442 days ago
Raku script to find SSRs in fastq file !
...dex($repeat) == 0 { push @ssrs, { start => $min-repeats,...line-number:"; for @ssrs -> $ssr { say " Start: $ssr, End: $ssr, Length: $ss...135 days ago
Perl and BioPerl script to extract protein sequences using GFF file !
#!/usr/bin/perl use strict; use warnings; use Bio::DB::Fasta; use Bio::SeqIO; # Paths to your GFF file and genome FASTA file my $gff_file = 'path/to/your/file....118 days ago
Python script to parse GFF file
...n(gff_file, 'r') as f: for line in f: if not line.startswith('#'): # Ignore comment...ields[1], 'type': fields[2], 'start': int(fields[3]),...62 days ago