Results for "make"
Bio-Scripts
Map them agaist reference avaga genome using following codes git clone https://github.com/lh3/bwa.git cd bwa; make bwa index ref.fa bwa mem -x pacbio ref.fa pacbio.fq > aln.sam bwa mem -x ont2d ref.fa ont-2D.fq > aln.sam1778 days ago
Install Samtools, Bcftools and htslib on Ubuntu !
...sudo apt-get install gcc sudo apt-get install make sudo apt-get install libbz2-...2 tar -vxjf htslib-1.9.tar.bz2 cd htslib-1.9 make cd .. wget https://github...ar -vxjf samtools-1.9.tar.bz2 cd samtools-1.9 make cd .. wget https://github...1610 days ago
Bash command to install bwa, samtools, picard !
...B libxml2-2.9.9 | hea5a465_1 2.0 MB make-4.2.1 |..._1 libxml2 pkgs/main/linux-64::libxml2-2.9.9-hea5a465_1 make pkgs/main/linux...1607 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --...
1494 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...wgd) ➜ build git:(master) ✗ cmake .. -DCMAKE_INSTALL_PREFIX=/home/urbe/ana...Building CXX object src/bmp/CMakeFiles/bmp.dir/bmp.cpp.o [ 3%...34%] Building CXX object src/CMakeFiles/i-visualize.dir/Alignmen...88%] Building CXX object src/CMakeFiles/i-adhore.dir/util.cpp.o...1256 days ago
- ...ds autoconf-doc devscripts dh-make dwz debian-keyring g++-multil...be installed: autoconf automake autopoint autotools-dev build...iously unselected package automake. Preparing to unpack .../003...-2build1) ... Setting up automake (1:1.15.1-3ubuntu2) ... upda...
1106 days ago
Tadpole is 250x faster than SPADes assembler !
...do not touch. processcontigs=f Explore the contig connectivity graph. (partially implemented) Processing modes: mode=contig contig: Make contigs from kmers....1028 days ago
- # Make sure that Java v8+ is installed: java -version # Install Nextflow curl -fsSL get.nextflow.io | bash # Add Nextflow binary to your PATH: mv nextflow ~/bin/ # OR system-wide installation: # sudo mv nextflow /usr/local/bin
1015 days ago
- # make reference for randomreads.sh # random...gth=100000 \ out=/dev/null # make 60x haploid coverage for Illu..."\d+"` echo "best k=${k}" # make 30x haploid coverage for PacB...random_reads_pacbio.log 2>&1 # make 30x haploid coverage for PacB...
980 days ago
Installing Covid19 Environment !
...########################################################################################################################################## | 100% make-4.3 | 507 KB |...976 days ago
