Results for "B"
Bio-Scripts
...0 0B 0B Build Ca...y/N] y Deleted Containers: 0b523b97fd6d70456bad5843147ec3f5...0 0B 0B Local Vo...-> 4a2cc5876794 Successfully built 4a2cc5876794 Successfull...1565 days ago
- ...to find os name and version on Linux: #Open the terminal application (bash shell) #For remote server...and to find os name and version in Linux: cat /etc/os-release lsb_release -a hostnamectl...
1563 days ago
Install Ragout genome assembler
$ conda install -c bioconda ragout Collecting pac...The following packages will be downloaded: package...| build --------------------...Total: 27.6 MB The following NEW packages...decorator-4.3.0 | 15 KB | #######################...1520 days ago
- $ conda install -c bioconda kraken Collecting pac...| build --------------------...Total: 3.2 MB The following NEW packages...on: done $conda install -c bioconda kraken-all Collecting...kraken-all-0.10.6_ea | 857 B | #######################...
1518 days ago
Python script to check sequence length in multifasta file
#!/usr/bin/python from Bio import SeqIO import sys cmdargs = str(sys.argv) for seq_record in SeqIO.parse(str(sys.argv[1]), "fasta"): output_line = '%s\t%i' % \ (seq_record.id, len(seq_record)) print(output_line)1271 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB...---> de6996f7ef50 Step 3/16 : FROM bioperl/bioperl-deps ---> e89...tep 6/16 : RUN apt-get install --yes build-essential gcc-multilib...
1498 days ago
- ...INER ID IMAGE COMMAND CREATED STATUS PORTS NAMES 72ca2488b353 my_image X hours...er #Copy a file from host to container: $ docker cp foo.txt 72ca2488b353:/foo.txt #Copy a file f...
1496 days ago
- #This method can be applied directly to FASTA or a FASTQ file, compre...eqtk is a fast and lightweight tool for processing biological data (FASTA/FASTQ)....le name.list, one sequence name per line: seqtk subseq input.fasta name.list > ou...
1458 days ago
Sequence Ids conversion files !
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ Nam...VE/ 02/01/2020, 05:30:00 ASN_BINARY/ 03/07/2020, 07:49:00...INFO/ 03/07/2020, 07:48:00 0 B 10/02/2012, 05:30:00 15.1 kB...GB 03/07/2020, 07:44:00 61.8 MB 03/07/2020, 07:44:00 21.4 MB...MB 03/07/2020, 14:38:00 1.2 kB 06/09/2011, 05:30:00 11.6 kB...1458 days ago
Command to sort the bed file !
#Command to sort the bed file sort -V -k1,1 -k2,2 test.bed1445 days ago
