Results for "set"
Bio-Scripts
(JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer vers...1272 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 -...
1498 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen...
1272 days ago
- Use pen and paper the assemble it. If you are brave enough, you can try to assemble this set of reads: CAGATGTCCT GACCTTTTCT TAAGATCTTT TCTTTAGCCG TTTCTTCTTT GA...
1272 days ago
Set up WGD environment using conda !
...d packages: wgd, bokeh, ete3, PyYAML, sklearn Building wheel for wgd (setup.py) ... done Created whe...33c52ac42d7996c0170a686e47362e33f012b2b3669 Building wheel for bokeh (setup.py) ... done Created whe...1260 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...ect src/CMakeFiles/i-adhore.dir/DataSet.cpp.o [ 54%] Building CXX ob...src/CMakeFiles/i-visualize.dir/DataSet.cpp.o [ 59%] Building CXX ob.../home/urbe/anaconda3/envs/wgd/./testset/datasetII/ptr_lists_030210_20.../home/urbe/anaconda3/envs/wgd/./testset/datasetII/ptr_lists_030210_20...1260 days ago
Perl script to run awk inside perl
...gestible) eval '$'.$1.'$2;' while $ARGV[0] =~ /^([A-Za-z_0-9]+=)(.*)/ && shift; # process any FOO=bar switches $, = ' '; # set output field separator $\ = "\n"; # set output record separator wh...1220 days ago
- #use strict; use warnings; use ExtUtils::Installed; use LWP::Simple; use Archive::Extract; # # First, check if all the required modules have been installed in t...
1215 days ago
Commandline for paired end reads simulation with BBMap !
...ead=false, genscaffoldinfo=true, retain, waitforwriting=false, gz=true, maxlen=536670912, writechroms=true, minscaf=1, midpad=500, nodisk=false] Set genScaffoldInfo=true Writing...1046 days ago
Tadpole is 250x faster than SPADes assembler !
...refiltering parameters: prefilter=0 If set to a positive integer, use a...if the filter is very full. Set to 'auto' to iteratively...f (aecc) Use aggressive error correction settings. Ov...1032 days ago
