Results for "Likelihood"
Blogs
...s of the ancestral genome reconstruction procedure. Ancestors implements several alignment algorithms, an indel maximum likelihood solver and a context-dependent maximum likelihood substitution inference algori...2558 days ago
String graph based genome assembly software and tools !
...s, which are de Bruijn graph based, SAGE uses the string-overlap graph. SAGE builds upon great existing work on string-overlap graph and maximum likelihood assembly, bringing an importa...2356 days ago
Bookmarks
- ...ge, polyploidy has received significant attention because of the impact such an event may have on the organism. ChromEvol implements a series of likelihood models for the evolution of c...
3416 days ago
- ...each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of chance similarities betwee...
3006 days ago
- +13 more Bookmarks
Pages
Bio++ : C Language libraries for your biological need
...files in Phylip format.Distance methods: (U/W)PGMA, NJ, BioNJ.Maximum likelihood (NNI, including a PhyML-like...ariant classes.Covarion models.Model including gaps.Global clock tree likelihood models.Virtually any kind of...3975 days ago
Genome Assembly Tools and Software - PART2 !!
...prior run of PRICE or any other ALE 20130717 – Assembly Likelihood EstimatorALE is a probabalistic framework for determining the likelihood of an assembly given the data...2713 days ago
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...glfSingle Description: uses likelihood-based model for variant calling, starts from genotype likelihoods that have been computed from...ng data”; Bayesian genotype likelihood model Input: BED or VCF file...genes; Also, “Estimates the likelihood of a particular nonsynonymous...2936 days ago
- ...es for each base; usually generated by sequencing machines. genotype likelihood: the probability that a specific genotype is present in the sample of interest. Genotype likelihoods are usually expressed as a P...
2897 days ago
- +1 more Top-level pages
News
- ...ted pipeline used to reconstruct trees aims at providing a high-quality phylogenetic analysis of different genomes , including Maximum Likelihood or Bayesian tree inference, a...
3946 days ago
ForBio and UiB course: Introduction to phylogenetic methods
...hasis on use of DNA data. Students will learn how to prepare their data, explore its properties and how to analyze it using distance, parsimony, likelihood and Bayesian methods. In the...1630 days ago
- +1 more News
Bio-Scripts
Create genome scaffolding with Perl
...} my $preTrim = min($sStart, $lStart); my $postTrim = min($sLen - $sEnd, $lLen - $lEnd); ## Only continue on if there's a good likelihood that this will work ## i...2336 days ago
Perl script to find coding regions in DNA sequences
...three symbols (option g) my @codons = ($seq =~ m/.../g); # the likelihood ratio is for a current triple...at is, 1/64. After this, # the log must be applied to obtain the log-likelihood ratio. # It is recommended t...2183 days ago
Comments
Comment on "Bio++ : C Language libraries for your biological need"
...ng to several model of evolution and reconstruction methods).bppML (Optimize a phylogenetic tree and other model parameters according to maximum likelihood. Several models are supported...3854 days ago
