Comment on "Benchmarking Perl Module !"
...chmark program that exercises the functionality of the module, running the benchmark using the timethese function from the Benchmark module, and analyzing the results to compare the pe...459 days ago
Comment on "Tools for Differential expression analysis"
...ps. There are several tools available for performing differential expression analysis, including: DESeq2: This R package is widely used for analyzing RNA-Seq data. It uses a negat...465 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...s in Bioinformatics is a comprehensive source for protocols and reviews in the multidisciplinary field of bioinformatics, including the areas of analyzing expression patterns, pathway...1586 days ago
2181 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...squo;s the quick and dirty of what was done: 1 Run minimap: This uses a pre-built set of defaults (the ava-pb in the code below) for analyzing PacBio data. Minimap only acc...2211 days ago
Comment on "Comparative genomics educational material and papers bookmarks"
Korean researchers have sequenced and have begun analyzing the genome of the Far Eastern Amur leopard, Panthera pardus orientalis, an endangered sub-species of leopard found in so...2778 days ago
Comment on "Does anyone have Nanopore latest updates?"
Sequencing ultra-long DNA molecules with the Oxford Nanopore MinION http://biorxiv.org/content/early/2015/05/20/019281.full-text.pdf+html Additional tools for analyzing Oxford Nanopore minION data by John Urban https://github.com/JohnUrban/poreminion3315 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
ANGUS is a site built around the 2010 course on Analyzing Next-Generation Sequencing Data. It contains a number of detailed tutorials on mapping, assembly, mRNAseq, ChIP-seq, and resequencing analysis. Enjoy! http://ged.msu.edu/angus/index.html3950 days ago