Comment on "Conda command to install checkV"
More at https://bitbucket.org/berkeleylab/checkv/src/master/690 days ago
690 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...algorithm using C++. https://phys.org/news/2020-06-scientists-synteny-blocks-animals.html https://github.com/ComparativeGenomicsToolkit/hal/tree/master/synteny1466 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...whole-genome alignments https://academic.oup.com/gigascience/article/9/6/giaa047/5848161 https://github.com/ComparativeGenomicsToolkit/hal/tree/master/synteny...1485 days ago
Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"
Basic commands for genome assembly https://raw.githubusercontent.com/rrwick/Long-read-assembler-comparison/master/supplementary_figures/Fig_S04_commands.png1604 days ago
Comment on "Perl script to count number of Ns in a multifasta file !"
If you want to count all 'N' in miltifasta file. (base) ? output_2_test git:(master) ? more scaffolds.fasta | grep -Ho N * | uniq -c 12 draft...1618 days ago
Comment on "RGFA: powerful and convenient handling of assembly graphs"
The Graphical Fragment Assembly (GFA) is a proposed format which allow to describe the product of sequence assembly. This gem implements the proposed specifications for the GFA format described under https://github.com/GFA-spec/GFA-spec/blob/master/GFA-spec.md as close as possible.1622 days ago
Comment on "Patterns: a modeling tool dedicated to biological network modeling"
https://github.com/fbertran/Patterns1798 days ago
2154 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
➜ LAMSA git:(master) ./lamsa aln Usage: lamsa aln [options] <ref.fa> <read.fa/fq> Algorithm options: -t --thread [INT] Number of threads. [1] -l --seed-len [IN...2178 days ago