1404 days ago
Comment on "Install snakemake and activate on conda"
conda clean --all1581 days ago
Comment on "Install Zef for Raku !"
# smoke test modules from all repositories zef smoke # run Build.pm if one exists in given path zef build . # update Repository package lists zef update #...1594 days ago
Comment on "How to set up SSH on Ubuntu 18.04"
The SSH server is not installed by default on Ubuntu desktop systems but it can be easily installed from the standard Ubuntu repositories. To install and enable SSH o...1599 days ago
Comment on "Quick tour of Genetic Algorithms !"
Useful links https://towardsdatascience.com/introduction-to-genetic-algorithms-including-example-code-e396e98d8bf3 https://github.com/memento/GeneticAlgorithm1645 days ago
Comment on "HALC: High throughput algorithm for long read error correction"
Inputs Long reads in FASTA format. Contigs assembled from the corresponding short reads in FASTA format. The initial short reads in FASTA format (only...2134 days ago
Comment on "Nanopolis: polish a genome assembly"
# Index the draft genome bwa index draft.fa # Align the basecalled reads to the draft sequence bwa mem -x ont2d -t 8 draft.fa reads.fa | samtools sort -o reads.so...2142 days ago
Comment on "Installing Perl environment on Linux"
curl -L http://cpanmin.us | perl - --sudo App::cpanminus The above is installing the "zero configuration CPAN modules installer" called cpanm. (Can take several minutes to install - don't break the process) and after - simply: cpanm Foo cpanm Module::One cpanm Another::Module2169 days ago
2180 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...map: This uses a pre-built set of defaults (the ava-pb in the code below) for analyzing PacBio d...ncatenated FASTQ file and the PAF file output from the miniasm step. The code below is taken from the examp...2210 days ago