Results for "implemented"
Blogs
Calling narrow and broad peaks from ChIP-Seq data
Know about the state-of-the-art algorithms implemented in Strand NGS for detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification...3225 days ago
Computer simulation of genetic mechanism !!
...rary preparation with parameter estimation http://bit.ly/rlsim-git Rmetasim Rmetasim is a front-end for the metasim engine that is implemented as a package that runs in the...3003 days ago
- +1 more Blogs
Bookmarks
Bioinformatics Algorithm Demonstrations and Tutorials
Abstract This project presents demonstrations of selected computer science algorithms important in bioinformatics, implemented in the spreadsheet program Microsoft Excel. Spreadsh...3733 days ago
- ...n-protein interaction prediction methods to predict prokaryotic two-component system protein-protein interactions (PPIs). The methods implemented in MetaPred2CS are 2 co-evolu...
2648 days ago
- +37 more Bookmarks
Pages
Bio++ : C Language libraries for your biological need
...ver attempts to tie a programmer down - it allows for easy implementation, it comes with a genuinely useful standard library that can itself be implemented in C, and it is both efficien...3976 days ago
Genome Assembly Tools and Software - PART2 !!
...e being sequenced. PRICE 1.2 – de novo Genome AssemblerPRICE (Paired-Read Iterative Contig Extension) is a de novo genome assembler implemented in C++. Its name describes th...2714 days ago
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Top-level pages
- ...ts determination available in the databases, approaches for automated data harvesting are being developed. Structure classification schemes, as implemented for example in the SCOP, CATH...
3976 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ng RNA-seq library preparation with parameter estimation http://bit.ly/rlsim-gitRmetasim Rmetasim is a front-end for the metasim engine that is implemented as a package that runs in the...3765 days ago
- +6 more Top-level pages
News
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...DEseq/DEseq2, edgeR, limma and Cufflinks, and feed the results into GAGE/Pahview for pathway analysis or visualization. All these workflows are implemented in R/Bioconductor. The work...3861 days ago
BEReX : Biomedical Entity-Relation eXplorer
...etwork; expand the network by particular types of entities and relations; and modify the network by removing or adding selected nodes. BEReX is implemented as a stand-alone Java applica...3868 days ago
- +5 more News
Opportunity posts
Marie Curie PhD position available immediately
...encing to characterise environmental adaptation. A single pipeline to analyse listerial transcriptomic and proteomic data will be developed and implemented by each partner for the sake...3327 days ago
MOPGA 2024 Visiting Fellowship Program for Early Career Researchers
...funded by the French Ministry for Europe and Foreign Affairs, in collaboration with the French Ministry for Higher Education and Research, and implemented by Campus France. The MOP...206 days ago
Bio-Scripts
- ...verbosity --ncbi_error_report Control program execution environment report generation (if implemented). One of...
2154 days ago
Tadpole is 250x faster than SPADes assembler !
...flags. dot= Write a contigs connectivity graph (partially implemented) dump= Write kmers a...rocesscontigs=f Explore the contig connectivity graph. (partially implemented) Processing modes: mode=c...1004 days ago
Comments
Comment on "FRODOCK 2.0: fast protein–protein docking server"
A web applet for browsing protein-protein interactions was implemented. It enables the display of interaction relationships, based upon neighboring distance and biological function. Availability: The Java applet is available at http://www.charite.de/bioinformatics1411 days ago
- ...uo; coverage, gaps in coverage, GC bias) and expression correlation (the tool provides RPKM-based estimation of expression levels). RNA-SeQC is implemented in Java and is not required i...
2166 days ago
