Comment on "Tools to detect synteny blocks regions among multiple genomes"
It is recommended to used genomes (N50 > 1Mb) for synteny analysis https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2026-42069 days ago
Comment on "Long read assembly workshop !"
Long reads base bacterial genome assembly https://inf-biox121.readthedocs.io/en/2016/Assembly/practicals/07_Assembly_using_minasm+racon.html2094 days ago
Comment on "nanofilt: Filtering and trimming of long read sequencing data"
Nanofilt steps https://gigabaseorgigabyte.wordpress.com/2017/06/05/trimming-and-filtering-oxford-nanopore-sequencing-reads/2095 days ago
2095 days ago
Comment on "Long read assembly workshop !"
Bacterial genome assembly tutorial http://evomics.org/learning/assembly-and-alignment/2017-assembly-lab/2095 days ago
Comment on "Long read assembly workshop !"
Long reads assembly PPT https://www.msi.umn.edu/sites/default/files/Badalamenti_PacBio_tutorial_12-10-2014.pdf2095 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
...newUI/Search/home/HomeWithPreLoad?PageType=JobDetails&PartnerId=25196&SiteId=5189&srcqs=%5EGt26CC5P4q%2Fj...tGyy%2FYu6RWEKumX%2BxVIGbmfHB9mvFUe%2BASNZJpMRV%2BUhkovbTuhtg%2F%2F%2F1pCDLAamITsHZT0d0Nzazx8rXYRnuR5...2111 days ago
Comment on "Indexcov: fast coverage quality control for whole-genome sequencing"
...---------|----------------- ca-certificates-2018.8.24 | ha4d7672_0 136 KB conda-forge certifi-2018...es: 2018.8.13-ha4d7672_0 conda-forge --> 2018.8.24-ha4d7672_0 conda-forge...########################################### | 100% Preparing transaction: don...2131 days ago
2154 days ago
Comment on "Nanopolis: polish a genome assembly"
...d.bam python nanopolish_makerange.py draft.fa | parallel --results nanopolish.results -P 8 \ nanopolish variants --consensus -o polished.{1}.vcf -w {1} -r reads.fa -b reads.sorted....2154 days ago