1987 days ago
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).2002 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Align Synteny - Beginning from completed or draft genomes, find shared syntenic regions and align them quickly while accounting for inversions, rearrangements, and duplications. http://www2.decipher.codes/AlignSynteny.html2026 days ago
Comment on "List of motif discovery tools !"
Motif algorithms This link on Nature explain: how does DNA sequence motif discovery work? Paper on BMC bioinformatics: survey of DNA motif finding algorithms This paper discusses some limitations and potentials of motif discovery algorithms (2005)2034 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
The Open Bioinformatics Journal https://www.benthamopen.com/TOBIOIJ/ #Note impact factor ~4 ... ???2064 days ago
Comment on "Tools for Searching Repeats And Palindromic Sequences"
I wrote a tools "Palindromer" to find palindromes in whole genome sequences. You can try https://github.com/jnarayan81/Palindromer . I am happy to improve it, if any features are requested.2065 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
It is recommended to used genomes (N50 > 1Mb) for synteny analysis https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2026-42066 days ago
Comment on "R and Bioconductor Tutorial"
R graphics https://bioconductor.org/packages/devel/bioc/vignettes/chromPlot/inst/doc/chromPlot.pdf #chromPlot2066 days ago
Comment on "List of gene ontology software and tools"
GO::TermFinder http://gmod.org/wiki/GO::TermFinder2091 days ago
Comment on "Long read assembly workshop !"
Long reads base bacterial genome assembly https://inf-biox121.readthedocs.io/en/2016/Assembly/practicals/07_Assembly_using_minasm+racon.html2091 days ago