Results for "Data"
Tags
Corona Virus Genome and Data Download !
Genes and its related metadata could be found on https://www.ncbi.nlm.nih.gov/datasets/coronavirus/genomes/Tags: corona, data, download, viruses
898 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v30) to lncRNAs from other species identified by PLAR. Available&nb...Tags: lncRNA, data, human, genome, plar
873 days ago
Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics with them. We are able to disentangle genome structure by comparing the sum of kmer pair coverages (CovA + CovB) to their relative coverage (CovB / (CovA + CovB)). Such an approach also allows us to analy...Tags: Smudgeplot, Inference, ploidy, heterozygosity, structure, whole, genome, sequencing, data
824 days ago
ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data
ContigExtender, was developed to extend contigs, complementing de novo assembly. ContigExtender employs a novel recursive Overlap Layout Candidates (r-OLC) strategy that explores multiple extending paths to achieve longer and highly accurate contigs. ContigExtender is effective for extending cont...Tags: ContigExtender, approach, improve, de novo, sequence, assembly, viral, metagenomics, data
21 days ago
- Open source machine learning and data visualization. Build data analysis workflows visually, with a large, diverse toolbox.
Tags: data, mining, machine learning
443 days ago
- gget is a free, open-source command-line tool and Python package that enables efficient querying of genomic databases. gget consists of a collection of separate but interoperable modules, each designed to facilitate one type of database querying in a single line of code.
Tags: gget, data, query, genomic, search
424 days ago
OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes
OrthoVenn3 is a powerful tool for comparative genomics analysis, used as a web server for full genome comparisons, annotation, and evolutionary analysis of orthologous clusters across multiple species. It has already been used by thousands of users from over 60 countries.Tags: OrthoVenn3, integrated, platform, exploring, visualizing, orthologous, data, across, genomes
393 days ago
Powerful books for learning data analysis with R
R is powerful tool for data analysis, visualization, and machine learning. And it costs $0 to use! Here are six FREE books you can use to learn R today: https://csgillespie.github.io/efficientR/ https://r-graphics.org/ https://rstudio-education.github.io/hopr/ https://r-pkgs.org/ https://r4d...Tags: Powerful, books, learning, data, analysis, R
23 hours ago
PhyloHerb: A high‐throughput phylogenomic pipeline for processing genome skimming data
Phylogenomic Analysis Pipeline for Herbarium Specimens What is PhyloHerb: PhyloHerb is a wrapper program to process genome skimming data collected from plant materials. The outcomes include the plastid genome (plastome) assemblies, mitochondrial genome assemblies, nuclear ribosoma...Tags: PhyloHerb, high‐throughput, phylogenomic, pipeline, processing, genome, skimming, data
266 days ago
Creating Genetic Maps from GBS data
Genetic map, as the name suggest is simply knowing the relative positions of specific sequences across the genome. There are various methods to generate them, but most popular method is to use a cross between the known parents and examining their progenies. These kinds of crosses to create specif...Tags: Creating, Genetic, Maps, GBS, data
264 days ago
