Comment on "RPKM normalization - Perl"
...and column 28 is length of each corresponding gene More info: https://github.com/santhilalsubhash/rpkm_rnaseq_count Sample input: https://github.com/santhilalsubhash/rpkm_rna...2927 days ago
Comment on "Software packages for next gen sequence analysis"
...ing paired-end data. It has been succesfully tested on the Arabidopsis genome with Illumina reads and a Whole-Genome Profiling (WGP) map. https://github.com/institut-de-genomique/MaG...2963 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
This useful repository contains the files from the course in de novo assembly https://github.com/lexnederbragt/denovo-assembly-tutorial2969 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such a useful list of synteny identification tools. If anyone interested to analyze synteny at the protein level, they can try this tool https://github.com/thiesgehrmann/proteny3039 days ago
Comment on "Does anyone have Nanopore latest updates?"
Sequencing ultra-long DNA molecules with the Oxford Nanopore MinION http://biorxiv.org/content/early/2015/05/20/019281.full-text.pdf+html Additional tools for analyzing Oxford Nanopore minION data by John Urban https://github.com/JohnUrban/poreminion3326 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
VCF parsing library https://github.com/mendelics/vcf Docs are already on the excellent godoc.org : http://godoc.org/github.com/mendelics/vcf3570 days ago
Comment on "List of popular bioinformatics software/tools"
skewer (transferred from https://sourceforge.net/projects/skewer) implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences. https://github.com/relipmoc/skewer3627 days ago
Comment on "R and Bioconductor Tutorial"
A quick tutorial on R https://github.com/jrherr/quick_basic_R_tutorial/blob/master/basic_R_tutorial.R3662 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Bioinformatics algorithms coursera https://github.com/jschendel/bioinformatics-algorithms-coursera3721 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
I love awk but recommend you to try bioawk . Bioawk is a modified version of awk which will parse some common sequence formats. https://github.com/lh3/bioawk3736 days ago