Comment on "Nanopolis: polish a genome assembly"
# Index the draft genome bwa index draft.fa # Align the basecalled reads to the draft sequence bwa mem...a reads.fa | samtools sort -o reads.sorted.bam -T reads.tmp - samtools index reads.sorted.bam python nano...2142 days ago
2180 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Install cpanm to make installing other modules easier (you'll thank us later). You need to type these commands into a Terminal emulator (Mac OS X, Win32, Linux) cpan App::cpanminus Now install any module you can find. cpanm Module::Name2261 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...mizers[M::main::117.963*3.34] loaded/built the index for 702657 target sequence(s)...zers[M::main::1649.738*17.48] loaded/built the index for 455528 target sequence(s)...zers[M::main::3086.956*18.40] loaded/built the index for 155969 target sequence(s)...2324 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...reference sequence (fastq or fasta). -i, --index STR Path to the index of the reference sequence. If...modes). m5 - BLASR M5 format. [sam] -I, --index-only - Build only the index f...nment will be output. [false] -P, --double-index - If false, only one gapped s...2335 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
My collection of biology journals NatureNature GeneticsNature MedicineNature BiotechnologyNature Reviews GeneticsNature methodsNature CommunicationsBioinfo...2370 days ago
Comment on "Ten International Scholarships for Indian Biotechnology and Bioinformatics Students"
RCB Young Investigator Awards http://www.rcb.res.in/index.php2504 days ago
Comment on "List of Bioinformatics and Computational Biology Journals"
Thanks for the extensive list, I also have local list of journals. I paste here for the bioinformatics community. Hope helpful. Advances and Applications in Bioinform...2657 days ago
Comment on "Various scholarships around the world !!"
For the past 85 years, the Fund for Scientific Research - FNRS has contributed to the development of fundamental research in the Wallonia-Brussels Federation through i...2687 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
For bacterial synteny -- MicroScope: Microbial Genome Annotation & Analysis Platform @ https://www.genoscope.cns.fr/agc/microscope/home/index.php2771 days ago