Comment on "Basic command-line to run BLAST"
Original paper https://www.sciencedirect.com/science/article/pii/S00222836058036021441 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
Using KAT again (You will need the modules: KAT/2.1.1 and gnuplot/4.6.5) – we can plot the kmer content of the assembly compared to the kmer content of the rea...1483 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Methods in Molecular Biology https://www.springer.com/series/7651 Accept bioinformatics tools, such as ART etc1503 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
International Journal of Bioinformatics Research and Applications Indexed in Scopus (Elsevier) Academic OneFile (Gale) ACM Digital Library Current Awareness in Biological Sciences (Elsevier) Chemical Abstracts (CAS)1509 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...another popular tool. Such high efficiency was attained by implementing a mathematically effective algorithm using C++. https://phys.org/news/2020-06-scientists-synteny-blocks-ani...1557 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Synteny based tool to arrange contigs "r2cat: synteny plots and comparative assembly" http://bibiserv.techfak.uni-bielefeld.de/r2cat https://academic.oup.com/bioinformatics/article/26/4/570/2433691571 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://academic.oup.com/gigascience/article/9/6/giaa047/5848161 https://github.com/Comparat...1576 days ago
Comment on "Setting up autoConTAMPR !"
...stdin: Fetched 9994 B in 1s (8676 B/s)Selecting previously un.../main libterm-readkey-perl amd64 2.31-1 [27.4 kB]Get:5 http:/...p libio-interactive-perl (0.0.6-1) ...Setting up libsub-uplev...45_eol.t ............... okt/46_eol_si.t ............ okt/50_...1588 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Molecular informatics journal is also a good alternative for bioinformatics tools publication https://onlinelibrary.wiley.com/toc/18681751/2020/39/41607 days ago
Comment on "List of gene ontology software and tools"
Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, Clark NR, Ma'ayan A. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinformatics. 2013;128(14). http://amp.pharm.mssm.edu/Enrichr/1638 days ago