Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
The FindMotif.pl program uses position-specific scoring matrices to search for sequences similar to a consensus sequence. Find more at http://www.people.vcu.edu/~elhaij/IntroBioinf/Notes/PSSM-Perl.html3789 days ago
Comment on "A Brief Bioinformatics Tutorial"
Thanks for starting such a useful bookmark, hope we will see many more useful tutorial website links over here. I know one webpage which connect to many more bioinformatics tutorial pages. http://www.thebioinformatica.com/onlinetutorial.htm3789 days ago
Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3801 days ago
Comment on "Bioinformatician stuck in wet-lab"
We were witnessing the birth of yet another “pet bioinformatician”. hahhaha funny but interesting blog.3804 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
Some of the useful Unix onliner http://genomics-array.blogspot.in/2010/11/some-unixperl-oneliners-for.html3815 days ago
Comment on "Does anyone have Nanopore latest updates?"
Results from Oxford Nanopore's MinION are promising, but fall short of high expectations. Find more at nature news http://www.nature.com/news/data-from-pocket-sized-genome-sequencer-unveiled-1.147243822 days ago
Comment on "R and Bioconductor Tutorial"
...searches [1] Biostrings – Reading sequences in R [2] BSGenomes – Reading in complete genomes and BioC annotation data [...ure for positional data. biomaRt – interface to BioMart annotations. rtracklayer –...3823 days ago
Comment on "Bioinformatics software for biologists in the genomics era"
NodeXL is a free and open-source network analysis and visualization software package for Microsoft Excel 2007/2010. home: http://nodexl.codeplex.com/3824 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.3825 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such an informative blog. I notice MCScan is missing. MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify putative homologous chromosomal regions, and align these regions using genes as anchors. More at http://www.ncbi.nlm.nih.gov/pubmed/222176003826 days ago