Comment on "Letter of motivation for bioinformatics applicants !"
...info regarding your previous scholastic and professional experience. You can also include teaching and research experience, work outside an academ...application. Hence, the motivation letter is the perfect insight into what you ge...1366 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Check the perl module Test if dependencies are met by running this perl one-liner: perl -e "use JSON::XS;"1381 days ago
Comment on "URMAP, an ultra-fast read mapper"
...reads because decompression is typically more expensive than the additional file...ncompressed file. OptionsThe FASTQ filename is specified following -map. Use "-".../dev/stdout or "-" (minus sign) if you want to pipe output to another program. T...1430 days ago
Comment on "Sibelia: A comparative genomics tool"
...with "fine" parameters set, type: Sibelia -s fine Helicoba...m [5, 6]. Note that you can specify multiple FASTA files, jus...me synteny block. Genomes permutations ------------------...s are from negative strand respectively. Note that this graph...1431 days ago
Comment on "Basic command-line to run BLAST"
Original paper https://www.sciencedirect.com/science/article/pii/S00222836058036021441 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...d to do is to combine the reads into a single file, for gzipped files, this can be done with zcat, or for unzipped files cat. Ex. $...y removing the combined fasta file, and re-zipping any unzipped files. Then download the out...1483 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...assembly based on incongruently mapped reads. It is heavily based o...urious sites to form smaller (but hopefully correct) contigs. Reapr...eapr needs, is a list of all “perfect” reads. This is re...pping called <assembler>_perfect. This should take about...1483 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Biology Direct journals accept short notes/ application notes https://biologydirect.biomedcentral.com/submission-guidelines/aims-and-scope1488 days ago
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Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
#To install perl modules perl -MCPAN -e shell # go to CPAN install modeinstall Bundle::CPAN # update CPANreload cpaninstall Set::Scalar1527 days ago