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• • Neel@neelam

  

  Comment on "Calling variants in non-diploid systems"

  FreeBayes is widely used for calling variants in diploid systems. However, it can also be used for calling variants in p...of samples is not known. This is the exact scenario we have here: in ou...or viral) genomes, but we do not know exactly how many. Thus we will use...

  1277 days ago

• • Neel@neelam

  

  Comment on "FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)"

  Usage Summary Produce help page. Quickly check the software usage and available command line options. $ ./...ingle query and single reference genome: $ ./fastANI -q...-ql [QUERY_LIST] --rl [REFERENCE_LIST] -o [OUTPUT_FILE] Ag...

  1335 days ago

• • LEGE@lege

  

  Comment on "Important Journals, Blogs and Forums for Bioinformaticians"

  Bioinformatics Journals Ranks from Google Scholar 1: Bioinformatics Journals (the most recent Im...(9.617 :: 7.017) Bioinformatics (4.981 :: 8.136) PLOS... (1.463 :: 2.155) IEEE-ACM Transactions on Computationa...:: 5.081) Frontiers in Genetics G3-Genes Genomes Genetics&n...

  1338 days ago

• • Neel@neelam

  

  Comment on "Modular, efficient and constant-memory single-cell RNA-seq preprocessing"

  scRNA-seq_intro https://pachterlab.github.io/kallistobustools/tutorials/scRNA-seq_intro/python/scRNA-seq_intro/

  1360 days ago

• • Rahul Nayak@rahul

  

  Comment on "List of non-commercial NGS genotype-calling software"

  Delly – Structural variant discovery by integrated paired-end and split-read a...umpy – lumpy: a general probabilistic framework for structural vari...nbsp;paper-2014 ] manta – Structural variant and indel caller...

  1376 days ago

• • Rahul Nayak@rahul

  

  Comment on "Bioinformatics Companies in India"

  Bioinformatics startup https://www.genique.co/

  1376 days ago

• • Jit@jit.aber

  

  Comment on "DAVI: Deep learning-based tool for alignment and single nucleotide variant identification"

  DeepConflation based CNN model is used to generate alignment of fasta file . Model try to match a query string in a referance genome to provide location of match. https://github.com/gguptaiitd/DeepConflation

  1380 days ago

• • Rahul Nayak@rahul

  

  Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"

  # envname is the name of your (existing) conda env conda activate envname # cpanm is available on either conda-forge or # bioconda, so add conda-forge (...w to set up bioconda if you need tools # for bioinformatics) conda config --add channel...

  1416 days ago

• • Jit@jit.aber

  

  Comment on "chromoMap-An R package for Interactive visualization and mapping of human chromosomes"

  Detail documentation is available at https://lakshay-anand.github.io/chromoMap/docs.html

  1438 days ago

• • BioStar@biostar

  

  Comment on "Installing BLAT on Linux !"

  Get the code. The best way to do this now for Unix users is via Git following the instructions at: http://genome.ucsc.edu/admin/git.html Or, fet...ngle file: rsync -azvP rsync://hgdownload.soe.ucsc.edu/genome/admin/jksrc.zip...

  1444 days ago

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