Results for "16S%20rRNA"
Blogs
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken into 6kbp pieces and mapped independently. Code: $ mapP...2282 days ago
- Downloading 16S rRNA databases can be crucial for various bioinformatics analyses, especially in microbiome research. However, it's important to note that databases can v...
23 days ago
Bookmarks
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5...2562 days ago
- The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. Th...
2879 days ago
- +6 more Bookmarks
Top-level pages
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short r...2697 days ago
Frequent parameters for bioinformatics tools !
Third party executable parameters and options. Trimmomatic “ILLUMINACLIP:...:2:30:10” “LEADING:15” “TRAILING:15”...1297 days ago
News
Curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism
MCBI have a curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism sources and current names. This set is critical for correctly...1545 days ago
Opportunity posts
Senior Scientist bioinformatics @ Eurofins Genomics India Pvt Ltd, Bengaluru.
Eurofins hiring @ Eurofins Genomics India Pvt Ltd, Bengaluru. Designation: Senior Scientist bioinformatics Experience: 8-9 years of experience in bioinformatics analy...1007 days ago
Bio-Scripts
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use ExtUtils::Installed; use LWP::Simple; use Archive::Extract; # # First, check if all the required modules have been installed in the sy...1172 days ago
Installing Covid19 Environment !
(base) vikas@vikas-Lenovo-ideapad-320-15ISK:~/vinodLab/Genepi$ conda env create -f covid19-environment.yml Collecting package metadata (repodata.json): done Solving env...935 days ago
Comments
Comment on "Setting up autoConTAMPR !"
Setting up mafft (7.123-1) ...Setting up maq (0.7.1-5) ...Setting up muscle (1:3.8.31-1) ...Setting up perl-doc (5.18.2-2ubuntu1.7) ...Setting up perl-tk (1:804.031-1buil...1454 days ago
