Results for "16S"
Blogs
BBTools for bioinformatician !
...ta file containing the sequence between the primers, for each reference sequence. We used these programs to synthetically cut V4 out of full-length 16S sequences.I should say, thoug...2265 days ago
- Downloading 16S rRNA databases can be crucial...ideline on how you can obtain 16S rRNA databases: NCBI (Na...enetic information, including 16S rRNA sequences. You can acce...GreenGenes is a widely used 16S rRNA gene sequence database....unities, including processing 16S rRNA sequences. QIIME often...
5 days ago
Bookmarks
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes F...2544 days ago
- The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. The data and...
2861 days ago
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Top-level pages
Genome Assembly Tools and Software - PART1 !!
...pore flow cell technologies (MinION). REAGO 1.1 – REconstruct 16S ribosomal RNA Genes from MetagenOmic data an assembly tool for 16S ribosomal RNA recovery from m...2680 days ago
Frequent parameters for bioinformatics tools !
...p; MeDuSa -random 100 Prokka --usegenus --force --addgenes --rfam --rawproduct cmsearch (taxonomy, 16S) --rfam --noali blastn (taxonomy, 16S) -evalue 1E-10 blas...1280 days ago
News
Curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism
...o quickly identify source organisms. The new databases are: *16S ribosomal RNA (Bacteria and A...1527 days ago
Opportunity posts
Senior Scientist bioinformatics @ Eurofins Genomics India Pvt Ltd, Bengaluru.
...data -Organizing and managing large scale genomic data -Should have experience in NGS data analysis, such as WGS, RNASeq, Small RNA, Metagenome (16S, ITS, Whole metagenome)etc....989 days ago
Bio-Scripts
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...aDB #https://www.arb-silva.de/no_cache/download/archive/release_138_1/Exports/ #LSU: Large subunit (23S/28S ribosomal RNAs) #SSU: Small subunit (16S/18S ribosomal RNAs) my $si...1154 days ago
Installing Covid19 Environment !
...rona/taxonomy ktUpdateTaxonomy.sh \ The default QUAST package does not include: * GRIDSS (needed for structural variants detection) * SILVA 16S rRNA database (needed for ref...917 days ago
Tags
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new NHMMER tool that comes with HMME...Tags: Bioinformatics, RNA, Barrnap, 5S, 23S, 16S
2544 days ago
Comments
Comment on "Setting up autoConTAMPR !"
...(This frontend requires a controlling tty.)debconf: falling back to frontend: Teletypedpkg-preconfigure: unable to re-open stdin: Fetched 365 kB in 16s (21.5 kB/s)Selecting previous...1436 days ago
