Results for "16S"
Blogs
BBTools for bioinformatician !
...ta file containing the sequence between the primers, for each reference sequence. We used these programs to synthetically cut V4 out of full-length 16S sequences.I should say, thoug...2263 days ago
- Downloading 16S rRNA databases can be crucial...ideline on how you can obtain 16S rRNA databases: NCBI (Na...enetic information, including 16S rRNA sequences. You can acce...GreenGenes is a widely used 16S rRNA gene sequence database....unities, including processing 16S rRNA sequences. QIIME often...
4 days ago
Bookmarks
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes F...2542 days ago
- The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. The data and...
2859 days ago
- +6 more Bookmarks
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...pore flow cell technologies (MinION). REAGO 1.1 – REconstruct 16S ribosomal RNA Genes from MetagenOmic data an assembly tool for 16S ribosomal RNA recovery from m...2678 days ago
Frequent parameters for bioinformatics tools !
...p; MeDuSa -random 100 Prokka --usegenus --force --addgenes --rfam --rawproduct cmsearch (taxonomy, 16S) --rfam --noali blastn (taxonomy, 16S) -evalue 1E-10 blas...1278 days ago
News
Curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism
...o quickly identify source organisms. The new databases are: *16S ribosomal RNA (Bacteria and A...1526 days ago
Opportunity posts
Senior Scientist bioinformatics @ Eurofins Genomics India Pvt Ltd, Bengaluru.
...data -Organizing and managing large scale genomic data -Should have experience in NGS data analysis, such as WGS, RNASeq, Small RNA, Metagenome (16S, ITS, Whole metagenome)etc....987 days ago
Bio-Scripts
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...aDB #https://www.arb-silva.de/no_cache/download/archive/release_138_1/Exports/ #LSU: Large subunit (23S/28S ribosomal RNAs) #SSU: Small subunit (16S/18S ribosomal RNAs) my $si...1153 days ago
Installing Covid19 Environment !
...rona/taxonomy ktUpdateTaxonomy.sh \ The default QUAST package does not include: * GRIDSS (needed for structural variants detection) * SILVA 16S rRNA database (needed for ref...916 days ago
Comments
Comment on "Setting up autoConTAMPR !"
...(This frontend requires a controlling tty.)debconf: falling back to frontend: Teletypedpkg-preconfigure: unable to re-open stdin: Fetched 365 kB in 16s (21.5 kB/s)Selecting previous...1434 days ago
