BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken in...nce sequence. We used these programs to synthetically cut V4 out of full-length 16S...2269 days ago
10 days ago
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S),...2549 days ago
2866 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of qual...ologies (MinION). REAGO 1.1 – REconstruct 16S ribosomal RNA Genes from MetagenOmic data an assembly tool for 16S...2684 days ago
Frequent parameters for bioinformatics tools !
Third party executable parameters and options. Trimmomatic “ILLUMINACLIP:.....orce --addgenes --rfam --rawproduct cmsearch (taxonomy, 16S) --rfam --noali blastn (taxonomy, 16S)...1284 days ago
Curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism
...ve a curated set of ribosomal RNA (rRNA) reference sequences (target...nces, we recently added a separate rRNA/ITS databases section on the...sp; *16S ribosomal RNA (Bacteria and Ar...----------------- BLAST form with rRNA/ITS databases BLAST db downl...1532 days ago
Senior Scientist bioinformatics @ Eurofins Genomics India Pvt Ltd, Bengaluru.
Eurofins hiring @ Eurofins Genomics India Pvt Ltd, Bengaluru. Designation: Senior Scientist bioinformatics Ex...ve experience in NGS data analysis, such as WGS, RNASeq, Small RNA, Metagenome (16S,...994 days ago
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2524 days ago
1441 days ago