BOL: Results for "16S rRNA"

Results for "16S rRNA"

- Surabhi Chaudhary@surabhi
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken in...nce sequence. We used these programs to synthetically cut V4 out of full-length 16S...
2265 days ago
- LEGE@lege
16sRNA Database Download
Downloading 16S rRNA databases can be crucial for various bioin...ideline on how you can obtain 16S rRNA databases: NCBI (Nation...GreenGenes is a widely used 16S rRNA gene sequence database. You...unities, including processing 16S rRNA sequences. QIIME often inclu...
5 days ago

- Abhimanyu Singh@abhimanyu
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S),...
2544 days ago
- Jit@jit.aber
Greengenes database
The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. The data and too...
2861 days ago
+8 more Bookmarks

- Jit@jit.aber
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of qual...ologies (MinION). REAGO 1.1 – REconstruct 16S ribosomal RNA Genes from MetagenOmic data an assembly tool for 16S...
2680 days ago
- BioStar@biostar
Frequent parameters for bioinformatics tools !
Third party executable parameters and options. Trimmomatic “ILLUMINACLIP:.....orce --addgenes --rfam --rawproduct cmsearch (taxonomy, 16S) --rfam --noali blastn (taxonomy, 16S)...
1280 days ago

- Rahul Nayak@rahul
Curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism
...ve a curated set of ribosomal RNA (rRNA) reference sequences (target...nces, we recently added a separate rRNA/ITS databases section on the...sp; *16S ribosomal RNA (Bacteria and Ar...----------------- BLAST form with rRNA/ITS databases BLAST db downl...
1527 days ago

- Shruti Paniwala@shruti
Senior Scientist bioinformatics @ Eurofins Genomics India Pvt Ltd, Bengaluru.
Eurofins hiring @ Eurofins Genomics India Pvt Ltd, Bengaluru. Designation: Senior Scientist bioinformatics Ex...ve experience in NGS data analysis, such as WGS, RNASeq, Small RNA, Metagenome (16S,...
989 days ago

- Jit@jit.aber
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }
2519 days ago
- Jit@jit.aber
Setting up autoConTAMPR !
(base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --...
1436 days ago
+2 more Bio-Scripts