Results for "AI"
Bio-Scripts
...d coordinates --matepair-distance Filter by distance between matepairs....y Defline -F|--origfmt Defline contains only original sequence name...2127 days ago
Installing Porechop on Ubuntu !
...imming them from the ends and splitting reads with internal adapters Main options: -i INPUT, --inpu...adapters from read ends --end_size END_SIZE The number of base pairs at each end of the read...2107 days ago
- ...rbe/Tools/Reapr_1.0.18/reapr fcdrate ./ 01.stats 02.fcdrate fcdcutoff=`tail -n 1 02.fcdrate.info.txt | c...rbe/Tools/Reapr_1.0.18/reapr fcdrate ./ 01.stats 02.fcdrate fcdcutoff=`tail -n 1 02.fcdrate.info.txt | c...
2100 days ago
- ...9b65cbef/PyIntervalTree-0.5.zip Requirement already satisfied: sortedcontainers in /home/urbe/anaconda3/l...ect lib/bamtools-2.3.0/src/api/CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o [ 24%] Building CXX o...
2100 days ago
Install Python locally on shared Linux server !
...and: source ~/.bashrc_profile #You might need to logout and login again for the environment to updat...le and add the #following line: export PATH=$HOME/.local/bin:$PATH #Again, reload the session by the c...2099 days ago
Installing Busco version 4.0.6
...357c0b_1002 162 KB conda-forge r-praise-1.0.0 | r36h611...-4.6.0-h14c3975_1000 gcc_impl_linux-64 pkgs/main/linux-64::gcc_impl_linux-64-...::sepp-4.3.10-py37_0 suitesparse pkgs/main/linux-64::suitesparse-5.2.0-...1454 days ago
- ...AC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20180830%2Fu...ist Print the list of available tools gatk Tool -...C bias. CollectHiSeqXPfFailMetrics (Picard) Cla...aneous tools, e.g. those that aid in data streaming Creat...
2076 days ago
Perl script to break the contigs by 'N'
...r NNNNN regions (scaffold breaks) #Hash nregions stores a hash from the contig id to the NNNNN regions found. #Each region is represented as a pair "$ini $end" indicating that...2064 days ago
Generate simulated polyploid genome !
...eterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3percent.fasta > toyheterozygous3percent.fasta #generated 50X of Illumina paired-end reads sim_reads --de...2054 days ago
Perl script to reverse complement a DNA sequence !
...verse complement DNA: WRONG:\n\n"; print "$revcom\n"; print "\nThat was a bad algorithm, and the reverse complement was wrong!\n"; print "Try again ... \n\n"; # Make a new c...2044 days ago
