Results for "ARCS"
Blogs
Software for genome assembly !
...Miniasm assembler https://github.com/lh3/miniasm 4 PBJelly scaffolding tool https://sourceforge.net/projects/pb-jelly/ 5 ARCS scaffolding tool https://github.com/bcgsc/arcs 6 Redundans reduction and sc...1359 days ago
Bookmarks
GenomeRing: alignment visualization based on SuperGenome coordinates
...er realized in a linear fashion as in genome browsers or by using a circular approach, where relationships between genomic regions are indicated by arcs. Both methods allow for the i...2679 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS, an application that utilizes the barcoding information contained in linked rea...eased over six-fold, using moderate coverage (25-fold) Chromium data. We expect ARCS to have broad utility in harn...2267 days ago
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Bio-Scripts
Genome Scaffolding and gap filling !
scaffolding with ARCS v1.0.3 (−c3, −l,4, −a,0.9, −z500, −m50, −20 000, −e30000, −s90). https://github.com/bcgsc/arcs Next, automated gap filling was performed using Sealer v2.0.1 (−L150, -P10, −k75-115 [step = 10]) https://github.com/bcgsc/abyss/tree/sealer-release635 days ago
Tags
ARCS: scaffolding genome drafts with linked reads
ARCS, an application that utilizes the barcoding information contained in linked reads to further organize draft genomes into highly contiguous assemblies. We show how the contiguity of an ABySS H.sapiensgenome assembly can be increased over six-fold, using moderate coverage (25-fold) Chromi...Tags: ARCS, scaffolding, genome, drafts, linked, reads
2267 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS requires two input files: Draft assembly fasta file Interleaved linked reads file (Barcode sequence expected in the BX tag of the read header or in the form "@readname_barcode" ; Run Long Ranger basic on raw chromium reads to produce this interleaved file)Tags: ARCS, scaffolding, genome, drafts, linked, reads
1981 days ago
Comments
Comment on "Run miniasm assembler on nanopore reads !"
...::main] ===> Step 4: graph cleaning <===[M::ma_sg_gen] read 129305 arcs[M::main] ===> Step 4.1: tr...itive reduction <===[M::asg_arc_del_trans] transitively reduced 83030 arcs[M::asg_arc_del_multi] removed...2296 days ago
