Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...me assembler for Next Generation Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high accuracy of Illumina sequence by esche...2339 days ago
Seal: SEquence ALignment evaluation suite
...output of the alignment tool and calculating the number of reads that were correctly or incorrectly mapped. Computing run times and measures of accuracy. Seal has interfaces...2326 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus outperforms PacBioToCA/LSC in terms of accuracy and contiguity/sensitivity (h...2324 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...ies of paired-end reads. To validate Multi-CAR, we have tested it on a real dataset composed of several prokaryotic genomes and also compared its accuracy performance with other multip...2264 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...them to be error-corrected. After the initial assembly, Flye performs an extra repeat classification and analysis step to improve the structural accuracy of the resulting sequence. Th...2204 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop ach...2201 days ago
Ranbow: a haplotype assembler for polyploid genomes
...terozygous. Ranbow can also be applied to other polyploid genomes. After a first phasing, Ranbow utilizes the assembled haplotypes to improve the accuracy of variant calling results an...2177 days ago
HALC: High throughput algorithm for long read error correction
...repeat based alignment approach) HALC was able to obtain 6.7-41.1% higher throughput than the existing algorithms while maintaining comparable accuracy. The HALC corrected long read...2170 days ago
2167 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...m DNA sequence reads, designed to "just work" with excellent speed and accuracy. We found that previously des...rmance on others. With this in mind, HapCUT2 is designed for speed and accuracy across diverse sequencing tec...2194 days ago