Results for "Accuracy"
Blogs
Dynamic chromosome breakpoints !!!
...les happens. The “chromosomal breakpoints” refers to these places where they break. Mostly, this process occurs with a high degree of accuracy at high frequency in both euk...3550 days ago
- ...pairs of markers separated by up to a given number of markers. It improves on a previous restricted to direct adjacencies, which revealed a high accuracy for adjacency prediction, but...
2528 days ago
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Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
...local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable...1144 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...ng(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have reduced computation cost forlocal alignment , while achieving accuracy comparable to existingdefacto...1144 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...AutoEditor corrects 80% of erroneous base calls, with an accuracy of 99.99%.This in turn improves the overall accuracy of genome sequences and facil...etter assembled repetitive regions, less gaps and higher accuracy for the resultant assembly....2683 days ago
Top-level pages
- ...m the primary sequence with statistics or neural networks. When using a multiple sequence alignment, secondary structure can be predicted with an accuracy above 70 %. 3D models can be...
3945 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...d non-model species. Peterson et al, PLoS One 7(5):e37135, . 2012. Full Text Imputation of unordered markers and the impact on genomic selection accuracy. Rutkowski et al, G3 3(3):427...3777 days ago
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Wire posts
News
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...sp;Dr. Vamsi Veeramachaneni, Chief Scientific Officer, Strand Life Sciences. “At Strand, we are continuously working towards improving the accuracy and efficiency of NGS data an...2384 days ago
NGS Platforms launched by BGI’s MGI Tech
...sequencing cost to $5 per gigabyte, with exceptionally high accuracy. Such innovations are helping...e market. Powered by DNBseq™, MGISEQ delivers quality data with accuracy for SNP and Indel calling rat...1940 days ago
Opportunity posts
Senior Statistician - Manchester or Belfast UK
...tion, independent data and dependent data analysis, medical diagnostic accuracy, statistical graphics and rep...analysis, biomarker research, Bayesian methods, quantifying predictive accuracy. Knowledge of regulatory sta...3226 days ago
Tags
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple assemblies, thus is suitable for comparison. More at http://bioinf.spbau.ru/quast http://bioinformatics.oxfordjou...Tags: Bioinformatics, Computational Biology, Assembly, Comparison, Accuracy
2948 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and flag other errors in an assembly for manual insp...Tags: Bioinformatics, Computational Biology, Assembly, Comparison, Accuracy, Evaluation
2948 days ago
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Comments
Comment on "A quick guide to Phred scaling"
...base call. For example, a Phred score of 10 corresponds to a base call accuracy of 90%, while a Phred score of 20 corresponds to a base call accuracy of 99%. Logarithmic scal...413 days ago
Comment on "Short-read assembly using Spades !"
...is to evaluate the quality of the assembled genome. This can be done using tools such as QUAST or BUSCO. These tools assess the completeness and accuracy of the assembled genome by co...413 days ago
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