List of motif discovery tools !
...-- protein annotation by domain analysis Identify the domain architect...tein ANnotation Diagram ORiented Analysis Find information about prote...pproach to protein-binding sites analysis Predict the location of pote...n sequences with a K-meanS based algorithm Find information about tand...2005 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to rea...pipelines and workflows, compute resources, data analysis reports, and case studies. GA...se construction, genome research, and bioservices analysis system consulting services. M...1271 days ago
Bioinformatics tools for telomere to telomere assembly !
...acy (Arang Rhie)● PanGenie – algorithm that leverages a pangenome re...ma (Transcriptome Annotation by Modular Algorithms) – software designed f...@GenomeRIK)● pbaa (PacBio Amplicon Analysis) – separates complex mi...1004 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medi...i.org/cms/research/projects/annotation-service/ Frequent command use for the analysis are at: https://bioinformati...1216 days ago
Ancient whole genome duplication (WGD) detection tools !
...etection, one is collinearity analysis, and the other is based on th...ave posted articles about the analysis process of WGD. I searched fo...t conda activate wgdstart our analysis environment, and then start t...l-vs-ALl + MCL classification analysis. mix: Hybrid modeling of Ks...1167 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E...(2012). GAGE: GAGE: A critical evaluation of genome assemblies and assembly algorith...1059 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (f...nt annotation (SnpEff, SnpSift) Consensus assessment report (QUAST) Lineage analysis (Pangolin) Clade assignment,...889 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • Kawulok, J., Deorowicz, S.,...A., Deorowicz, S., QuickProbs – A Fast Multiple Sequence Alignment Algorith...875 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structu...nomes Conduct comparative biometric analysis of chromosomes of different o...s/Metagenomes A data management and analysis system for metagenomes I...ams of phylogenetic and evolutionary analysis. PhyloPat -- the phyloge...689 days ago
Tools for Differential expression analysis
apeglm - https://bioconductor.org/packages/release/bioc/html/apeglm.html ashr - https://github.com/stephens999/ashr, https://cran.r-project.org...556 days ago