Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...tinguish patients’ specific mutations; algorithm uses k-mers and is based...enetic trees using SNPs (based on k-mer analysis) Software (C) https://sourc...Kraken Taxonomic assignment in metagenome analysis by exact k-mer search; L...2383 days ago
2363 days ago
Single Cell RNAseq data analysis tutorial !!
...nks: Single Cell RNAseq data analysis Tutorial A step-by-step workflow for low-level analysis of single-cell RNA-seq data A...regulatory network inference algorithm from single-cell RNA-Seq dur...uation in single-cell RNA-seq analysis https://github.com/zji90/TSC...2362 days ago
2362 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a diff...; print "@distances"; # prints "2 0 3" use Algorithm::LCSS qw( LCSS CSS CSS_Sorted...ein::XS are both versions of the Levenshtein algorith...2353 days ago
Tools for bacterial whole genome annotation
...bsp;provides detailed annotation and pathway analysis. Takes several hours per genom...to do functional profiling and pathway analysis of your genome(s)… whi...combines ab initio gene prediction algorithms with homology based methods...2343 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n...Calculate GCM of numbers 20 and 35 using Euclid's algorithmperl -le '$n = 20; $m = 35; ($...# Find and print all permutations of a listperl -MAlgorith...2314 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematica...components). The Network analysis provides the ability to quanti...and dimensionality reduction algorithms https://www.broadinstitute...Automatic reconstruction and analysis of biological networks and Pe...2300 days ago
List of visualization tools for genome alignments
...l results but also for improving analysis protocols, testing data qualit...esult drafts. Its integration in analysis pipelines allows the optimiza...tools, which could be useful for analysis and interpretation of re...ses a locality-sensitive hashing algorithm to enumerate all unique sequ...2296 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience...2292 days ago