Results for "Align"
Users
Brief description: Currently, I'm pursuing a PhD at Bioinformatics Centre, University of Pune, Pune, India. I have developed an algorithm for alignment-free sequence analysis with its applications in molecular phylogeny, clustering and sero/genotyping .2922 days ago
- About me: I am a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center.
2359 days ago
Blogs
- There any many of the documents have been developed and tested by scientist around the world. I found this one really useful. The data used is available for download a...
3261 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...rd Nanopore data BWA Fast nanopore data tuned alignment tool https://github.com/l...github.com/isovic/graphmap LASTNanopore tuned alignment toolhttp://last.cbrc.jp/...ers for Oxford Nanopore MinION long reads LQSDALIGNER, Celera OLC Nanocorrect, Na...2317 days ago
- +4 more Blogs
Bookmarks
CoronaVIR: Computational Resources on Novel Coronavirus (SARS-CoV-2 or COVID-19)
Aim of this web site is to facilitate the scientific community to fight against severe pandemic disease COVID-19 caused by SARS-CoV-2. Here, We have collected and or...1101 days ago
- MetaPred2CS Web server is a meta-predictor based on Support Vector Machine (SVM) that combines 6 individual sequence based protein-protein interaction p...
2617 days ago
- +45 more Bookmarks
Top-level pages
- ...uction to Bioinformatics Algorithms Lectures 1-2 by Dr. Max Alekseyev USC, 2009 Online Lectures on Bioinformatics Sequence Alignment Algorithms Algorithm for sequence alignment: dynamic programming Net...
3943 days ago
Bioinformatics Courses Around the World
...mann Institute of Science, Israel) Rutgers University, PhD Program in Computational Biology (Newark, New Jersey) Sequence Alignment and Modeling System ...3940 days ago
- +17 more Top-level pages
Wire posts
News
Vaccination can be dangerous sometimes !!!
It is always believed that vaccination is permanent cure from specific diseases, but recent finding suggest something else. A group of scientist led by Surender Khuran...3891 days ago
Programming language to build synthetic DNA
A team led by Georg Seelig (http://homes.cs.washington.edu/~seelig/index.html) at University of Washington has developed a programming language for chemistry...3866 days ago
- +6 more News
Fun
Bioinformatician become producer/director !!!
...e jayenge Raju ban gaya Genefinder. Har Ligand jo dock karega. Alignment to hona hi tha. Mera seq...Se Program Tak Haan Maine Bhi ClustalW Kiya Hai GeneScan Karke Dekho Alignment Apna Sequence Parayi *...3915 days ago
Bio-Scripts
Calculate some statistics for a DNA alignment with Perl
use Bio::AlignIO; use Bio::Align::DNAStatistics; my $stats = Bio::Align::DNAStatistics->new(); my $alignin =...'t/data/insulin.water'); my $aln = $alignin->next_aln; my $jcmatrix...ous substitutions ## my $in = Bio::AlignIO->new(-format => 'fasta',...2646 days ago
Biological Sequence handling with Perl !
...quence::Generic; use Sequence::Nucleotide::Subsequence; use Sequence::Alignment; use Carp; use strict...return ($self->length-$pos,$self->length-$pos-3*length($max)); } sub align { my $self = shift;...2178 days ago
- +6 more Bio-Scripts
Polls
Which of the following programming language is best for a bioinformatics beginner?
...o learn a programming language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and expression analysi...3527 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center. His research intere...2359 days ago
Tags
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate th...
Tags: LAST, Bioinformatics, Mapping, Match, Align, Sequences, Compare
2975 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to ...
Tags: Bioinformatics, Chromosome, Genome, NGS, Align, Compare, Similarity
2690 days ago
- +6 more Tags
Comments
Comment on "Mugsy: multiple whole genome alignment tool"
...genomes genome1.fasta genome2.fasta genome3.fasta This example will align three genomes and output a fi...roblems. View or parse MAF output The output of Mugsy is Multiple Alignment Format (MAF).One option f...1282 days ago
Comment on "Setting up autoConTAMPR !"
...phyml (2:20120412-2) ...Setting up primer3 (2.3.6-1) ...Setting up probalign (1.4-3) ...Setting up probcon...ee (10.00.r1613-1) ...Setting up tigr-glimmer (3.02-3) ...Setting up tm-align (20130511+dfsg-1) ...Setting...1439 days ago
- +14 more Comments
