HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA...n). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and...2183 days ago
MIX: Combining multiple assemblies from NGS data
...proposed algorithm builds an extension graph where vertices represent extremities of contigs and edges represent existing alignments between these extremities. These alignment edges are used for contig ext...2183 days ago
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to ca...2162 days ago
2160 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
...es poorly aligned positions and divergent regions of a DNA or protein alignment so that it becomes more suita...p;example output file showing the blocks selected from a protein alignment. Further information can be f...2158 days ago
HALC: High throughput algorithm for long read error correction
...ligned to at least one contig region, including its true genome region’s repeats in the contigs sufficiently similar to it (similar repeat based alignment approach) HALC was able to...2152 days ago
2149 days ago
D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way
...o an interactive plot written with d3.js library. D-Genies also allows to display dot plots from other aligners by uploading their PAF or MAF alignment file. http://dgenies.toulo...2149 days ago
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