List of genome announcement, notes and reporting journals
...ubmitted to GenBank. May also contain specifically focused comparative analyses of previously published genom...eir respective vectors, as well as re-sequencing or comparative genome analyses. Should occupy no more than t...2023 days ago
List of motif discovery tools !
...ear Motif Resource Predict functional sites in eukaryotic proteins. EXPASY Proteome Tools Collection Use a collection of tools for protein analyses. EXPASY-Findmod Predict...2008 days ago
Bioinformatics software for biologists in the genomics era
...per-base sequencing costs, this influx of DNA sequence data has encouraged laboratory scientists to engage large datasets in comparative sequence analyses for making evolutionary, func...3802 days ago
Phylogenomics/Phylogenetic website
...s forum is to discuss best practice and new developments in phylogenetics. Although we do have a Troubleshooting category for getting feedback on analyses, this is not a help site for...3696 days ago
Evaluation of genome assembly software based on long reads
...many dozens of plant and animal genomes, enabling new insights into evolution and sequence diversity. They have also been applied to resequencing analyses, to create detailed maps of s...1935 days ago
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R package for visualising GO enrichment
...ichment results as word clouds and arranges them together with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expressi...3955 days ago
Surrogate Variable Analysis (SVA)
...nstructed directly from high-dimensional data (like gene expression/RNA sequencing/methylation/brain imaging data) that can be used in subsequent analyses to adjust for unknown, unmode...3490 days ago
Bioinformatics PhD studentship available in New Zealand
...anisms of genes and non-coding RNAs, and their influences on different phenotypes and disease states of a cell. Recent shifts towards large-scale analyses of transcriptional regulation...3963 days ago
Postdoc Positions - Mammalian Transcriptome Evolution at SIB
...splicing, microRNAs, long noncoding RNAs, and dosage compensation. The postdoctoral fellow will perform integrated evolutionary/bioinformatics analyses based on data produced in the...3934 days ago
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Set up WGD environment using conda !
...s.-all blastp + MCL clustering. mix Mixture modeling of Ks distributions. pre Check and optionally rename CDS files. syn Co-linearity analyses. viz Plot histograms/dens...1218 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...archers who study in this field should never expect a tool to do their analyses for them. Besides computation...h a strong biological background can be able to perform bioinformatics analyses by him/herself without needin...2377 days ago
ALPHA: A Toolkit for Automated Local Phylogenomic Analyses
Automated Local Phylogenomic Analyses, or ALPHA, is a python-based application that provides an intuitive user interface for phylogenetic analyses and data visualization. It has four distinct modes that are useful for different types of phylogenetic analysis: RAxML, File Converter, MS Comparison,...Tags: ALPHA, Toolkit, Automated, Local, Phylogenomic, Analyses
2252 days ago
VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
find the resources we provide here useful in getting you set up to analyse and interpret your data. To reference VESPA: https://peerj.com/preprints/1895/ Documentation is now hosted on ReadTheDocsTags: VESPA, large-scale, Evolutionary, Selective, Pressure, Analyses
1794 days ago
Comment on "Basic command-line to run BLAST"
...score, identity, and e-value. Overall, BLAST is a powerful tool for searching sequence databases and can be used for many different types of analyses, including gene annotation, f...438 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...ked with the Global Alliance for Genomics and Health Benchmarking Team:Benchmarking tools, Manuscript, GitHub Sequencing Data:Data and analyses from most short, linked, and...1575 days ago