2601 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we presen...able at: http://amp.pharm.mssm.edu/Enrichr. https://academic.oup.com/nar/article...2558 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and...NCBI Prokaryotic Genome Automatic Annotation Pipeline (PGAAP; see Pubmed Article...2539 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find...n find the original publication in GBE here: https://academic.oup.com/gbe/article...2339 days ago
Japanese Multi Omics Reference Panel, jMorp
Japanese Multi Omics Reference Panel, jMorp, is a database of metabolome and proteome data in plasma obtained from v...several hundreds of proteins until now. https://academic.oup.com/nar/advance-article...2319 days ago
DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. I...d character matrices, and supports the reading and writing of phylogenetic data in a ran...Descriptions of data formats supported for reading/writing . and more....2197 days ago
MITObim - mitochondrial baiting and iterative mapping
This document contains instructions on how to use the MITObim pipeline described in Hahn et al. 2013. The full article can be found here. Kindly cite the article...2182 days ago
2148 days ago
RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
RestrictionDigest can simulate the reference genome digestion and generate comprehensive information of the simulati...see the academic paper published online (http://www.sciencedirect.com/science/article...2147 days ago
Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequence...2140 days ago