Results for "Assembled"
Blogs
...rrangements of synteny blocks at the extremities of the progressively assembled CARs. The method starts with...nd to detect other reliable adjacencies, in order to reach completely assembled ancestral genomes. FastML A...2533 days ago
List of genome announcement, notes and reporting journals
...k: http://memorias.ioc.fiocruz.br/ 6. Molecular Ecology Resources, Wiley, Genomic resources note, Impact factor 3.7, Short notes on newly assembled and annotated transcriptomes,...2011 days ago
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Bookmarks
Assembly and diploid architecture of an individual human genome via single-molecule technologies
The research work shows that it is now possible to integrate single-molecule and high-throughput sequence data to generate de novo assembled genomes that approach reference quality. h...3223 days ago
RNA-Seq De novo Assembly Using Trinity
...llation directory. Assemble RNA-Seq data like so: Trinity --seqType fq --left reads_1.fq --right reads_2.fq --CPU 6 --max_memory 20G Find assembled transcripts as: 'trinity_out_...2968 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...network matching algorithm. Given an already-assembled dataset, it is capable of ass...emblies. SSPACE 3.0 – Scaffolding pre-assembled Contigs using Paired-read dat...The benefits of this approach include better assembled repetitive regions, less gaps...2688 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...compressed data structures. Simpson & Durbin, Genome Research 22:549-556, 2012 Full Text [Describes the String Graph Assembler (SGA), which assembled a human genome in less than 6...3782 days ago
- ...produces a sequencer-ready library. Alignment Mapping of sequence reads to a known reference sequence Referencesequence/genome A fully assembled version of a genome that can...
2872 days ago
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Wire posts
News
Scientists map 17,294 proteins produced in human body
...nalysis by identifying translated proteins from annotated pseudogenes, non-coding RNAs and untranslated regions. https://www.proteomicsdb.org/ -Assembled protein evidence for 18,097 g...3632 days ago
Phased Human Genome Assembly !
...the genome contained in gapless sequence at least 27 Mb long. The primary contig assembly is 2.89 Gb long and consists of 865 contigs that were assembled with PacBio data generated wi...2039 days ago
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Opportunity posts
- ...erential expression testing involving Normalization, Statistical testing, heat map generation & hierarchical clustering 7. Annotating the assembled genome and geneet testing an...
3646 days ago
Fun
What a bioinformatician always dream for ???
Well established bioinformatics labs with SGI(silicon graphics interface) License of all commercial softwares. Complete, and fully assembled genome of the girl :P A girl/boy...3848 days ago
Video
The Cat: evolution, domestication and Genome 10k
...ic Officer. Convinced of the utility of exploring diverse species to advance our understanding of the human genome, Dr O'Brien and his team have assembled over 62,000 animal and 424,00...3832 days ago
- ...elp of other factors between the strands of the DNA double helix. The assembled collection of all these facto.... It acts as a template for the synthesis of an RNA molecule which is assembled one sub-unit at a time by mat...
3387 days ago
Bio-Scripts
- ...fle Number of Commands: 29867 succeeded(29867) 100% completed. All commands completed successfully. :-) ** Harvesting all assembled transcripts into a single mul...
2130 days ago
Perl script to calculate the basic stats of the assembled genome !
#!/usr/bin/perl use strict; use warnings; use Bio::SeqIO; # Input file containing the genome assembly in FASTA format my $input_file = 'genome_assembly.fasta';...97 days ago
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Tags
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap-filling. If you encounter any issues, please contact me at kklam@eecs.berkeley.edu. My name is Ka-Kit Lam. https://github.com/kakitone/MetaFinisherSC ht...
Tags: BIGMAC, Breaking, Inaccurate, Genomes, Merging, Assembled, Contigs, Long, Read, Metagenomic, Assembly
2543 days ago
- CroCo is a program to detect cross contamination events in assembled transcriptomes using sequencing reads to determine the true origin of every transcripts.Such cross contaminations can be expected if several RNA-Seq experiments were prepared during the same period at the same lab, or by the sam...
Tags: CroCo, program, detect, potential, cross, contaminations, HTS, assembled, transcriptomes, expression, quantification
1947 days ago
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Comments
Comment on "Short-read assembly using Spades !"
...astq Here, "output_directory" is the name of the directory where the assembled genome will be saved, "forwar...After running SPAdes, the next step is to evaluate the quality of the assembled genome. This can be done usin...418 days ago
Comment on "Short-read assembly using Spades !"
...nd <output_dir> with the name of the output directory where the assembled contigs will be saved. Che...Once SPAdes has finished running, check the output directory for the assembled contigs. The contigs will be...424 days ago
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