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Results for "BBmap"

Blogs

• • Surabhi Chaudhary@surabhi

  

  BBTools for bioinformatician !

  BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp....When mapping small RNA's with BBMap use the following flags to re...maxlength=55 seed=5 [As of BBmap v. 36.59] rendomreads.sh gain...n get the same sensitivity as BBMap by adding the flags "minid=0....

  2272 days ago

Bookmarks

• • Shruti Paniwala@shruti

  

  BBMap help

  BBMAP • a solution for everything Th...There are common options for most BBMap suite programs and depending...is automatically chosen/set. Using BBMap Mapping Nanopore reads BBMa...https://www.biostarhandbook.com/tools/bbmap/bbmap-help.html

  2765 days ago

• • Neelam Jha@neelam

  

  BBTools User Guide

  ...background information covering usage of all tools. Installation General Usage Guide Data Preprocessing Guide Specific Tool Guides: BBDuk BBMap BBMask BBMerge BBNorm Cal...

  2338 days ago

• +1 more Bookmarks

Top-level pages

• • Jit@jit.aber

  

  BBMap/BBTools package: Multipurpose tool designed for converting reads or other nucleotide data between different formats.

  Reformat is a member of the BBMap/BBTools package. It is a multipurpose tool des..."reformat.sh" with "java -ea -Xmx200m /path/to/bbmap/current/ jgi.ReformatReads" for example, java -ea -Xmx200m C:\bbmap\current\ jgi.ReformatReads in...

  2715 days ago

• • Poonam Mahapatra@poonam

  

  BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries

  BBSplit internally uses BBMap to map reads to multiple genomes at once, and d...multiple references simultaneously, using BBMap. The reads go to the bin of t...available here:https://sourceforge.net/projects/bbmap/ The sensitivity can be rais...

  2315 days ago

Wire posts

• • Jit@jit.aber

  

  BBMAP tools descriptions https://github.com/BioInfoTools/BBMap/blob/master/docs/ToolDescriptions.txt

  2631 days ago

• • Jit@jit.aber

  

  #Filter out #reads with #size to discard reads containing many Ns. BBNorm ( https://sourceforge.net/projects/bbmap/ )

  2492 days ago

• +4 more Wire posts

Bio-Scripts

• • Jit@jit.aber

  

  Commandline for paired end reads simulation with BBMap !

  ...git:(main) ✗ /home/urbe/Tools/bbmap/randomreads.sh ref=mixed.fa out=reads_BBMAP250.fq paired interleaved read...x162129m -cp /home/urbe/Tools/bbmap/current/ align2.RandomReads3...ert size=400-600 Wrote reads_BBMAP250.fq Time: 5.722 seconds.

  991 days ago

• • LEGE@lege

  

  Tadpole is 250x faster than SPADes assembler !

  ...ength, but some values are not supported. Specifically, it allows 1-31, multiples of 2 from 32-62, multiples of 3 from 63-93, etc. Please read bbmap/docs/guides/TadpoleGuide.txt...

  977 days ago

• +3 more Bio-Scripts

Tags

• • Shruti Paniwala@shruti

  

  BBMap help

  BBMAP • a solution for everything That content has been reformatted and it is being expanded to include more information. There are common options for most BBMap suite programs and depending on the file extension the input/output format is automatically chosen/set. Using BBMap M...

  Tags: Bioinformatics, BBMap, Help, NGS

  2765 days ago

• • Jit@jit.aber

  

  BBmap Magic !

  There are common options for most BBMap suite programs and depending on the file extension the input/output format is automatically chosen/set.Note: For most programs in BBTools, you can add the parameter "config=foo.txt". Every line in "foo.txt" will be added as if it were a command-line pa...

  Tags: BBmap

  2292 days ago

Comments

• • Abhinav@abhinav

  

  Comment on "BBTools for bioinformatician !"

  Latest download link at https://sourceforge.net/projects/bbmap/files/BBMap_38.94.tar.gz More at https://sourceforge.net/projects/bbmap/files/

  919 days ago