BOL: Results for "BBmap"

Results for "BBmap"

- Surabhi Chaudhary@surabhi
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp....When mapping small RNA's with BBMap use the following flags to re...maxlength=55 seed=5 [As of BBmap v. 36.59] rendomreads.sh gain...n get the same sensitivity as BBMap by adding the flags "minid=0....
2263 days ago

- Shruti Paniwala@shruti
BBMap help
BBMAP • a solution for everything Th...There are common options for most BBMap suite programs and depending...is automatically chosen/set. Using BBMap Mapping Nanopore reads BBMa...https://www.biostarhandbook.com/tools/bbmap/bbmap-help.html
2756 days ago
- Neelam Jha@neelam
BBTools User Guide
...background information covering usage of all tools. Installation General Usage Guide Data Preprocessing Guide Specific Tool Guides: BBDuk BBMap BBMask BBMerge BBNorm Cal...
2329 days ago
+1 more Bookmarks

- Jit@jit.aber
BBMap/BBTools package: Multipurpose tool designed for converting reads or other nucleotide data between different formats.
Reformat is a member of the BBMap/BBTools package. It is a multipurpose tool des..."reformat.sh" with "java -ea -Xmx200m /path/to/bbmap/current/ jgi.ReformatReads" for example, java -ea -Xmx200m C:\bbmap\current\ jgi.ReformatReads in...
2706 days ago
- Poonam Mahapatra@poonam
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and d...multiple references simultaneously, using BBMap. The reads go to the bin of t...available here:https://sourceforge.net/projects/bbmap/ The sensitivity can be rais...
2307 days ago

- Jit@jit.aber
BBMAP tools descriptions https://github.com/BioInfoTools/BBMap/blob/master/docs/ToolDescriptions.txt
2622 days ago
- Jit@jit.aber
#Filter out #reads with #size to discard reads containing many Ns. BBNorm ( https://sourceforge.net/projects/bbmap/ )
2483 days ago
+4 more Wire posts

- Jit@jit.aber
Commandline for paired end reads simulation with BBMap !
...git:(main) ✗ /home/urbe/Tools/bbmap/randomreads.sh ref=mixed.fa out=reads_BBMAP250.fq paired interleaved read...x162129m -cp /home/urbe/Tools/bbmap/current/ align2.RandomReads3...ert size=400-600 Wrote reads_BBMAP250.fq Time: 5.722 seconds.
982 days ago
- LEGE@lege
Tadpole is 250x faster than SPADes assembler !
...ength, but some values are not supported. Specifically, it allows 1-31, multiples of 2 from 32-62, multiples of 3 from 63-93, etc. Please read bbmap/docs/guides/TadpoleGuide.txt...
968 days ago
+3 more Bio-Scripts

- Abhinav@abhinav
Comment on "BBTools for bioinformatician !"
Latest download link at https://sourceforge.net/projects/bbmap/files/BBMap_38.94.tar.gz More at https://sourceforge.net/projects/bbmap/files/
910 days ago