BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp....When mapping small RNA's with BBMap use the following flags to re...maxlength=55 seed=5 [As of BBmap v. 36.59] rendomreads.sh gain...n get the same sensitivity as BBMap by adding the flags "minid=0....2271 days ago
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BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and d...multiple references simultaneously, using BBMap. The reads go to the bin of t...available here:https://sourceforge.net/projects/bbmap/ The sensitivity can be rais...2315 days ago
Commandline for paired end reads simulation with BBMap !
...git:(main) ✗ /home/urbe/Tools/bbmap/randomreads.sh ref=mixed.fa out=reads_BBMAP250.fq paired interleaved read...x162129m -cp /home/urbe/Tools/bbmap/current/ align2.RandomReads3...ert size=400-600 Wrote reads_BBMAP250.fq Time: 5.722 seconds.990 days ago
Tadpole is 250x faster than SPADes assembler !
...ength, but some values are not supported. Specifically, it allows 1-31, multiples of 2 from 32-62, multiples of 3 from 63-93, etc. Please read bbmap/docs/guides/TadpoleGuide.txt...977 days ago
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Latest download link at https://sourceforge.net/projects/bbmap/files/BBMap_38.94.tar.gz More at https://sourceforge.net/projects/bbmap/files/918 days ago