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Results for "BBmap"

Blogs

• • Surabhi Chaudhary@surabhi

  

  BBTools for bioinformatician !

  BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp....When mapping small RNA's with BBMap use the following flags to re...maxlength=55 seed=5 [As of BBmap v. 36.59] rendomreads.sh gain...n get the same sensitivity as BBMap by adding the flags "minid=0....

  2269 days ago

Bookmarks

• • Shruti Paniwala@shruti

  

  BBMap help

  BBMAP • a solution for everything Th...There are common options for most BBMap suite programs and depending...is automatically chosen/set. Using BBMap Mapping Nanopore reads BBMa...https://www.biostarhandbook.com/tools/bbmap/bbmap-help.html

  2763 days ago

• • Neelam Jha@neelam

  

  BBTools User Guide

  ...background information covering usage of all tools. Installation General Usage Guide Data Preprocessing Guide Specific Tool Guides: BBDuk BBMap BBMask BBMerge BBNorm Cal...

  2336 days ago

• +1 more Bookmarks

Top-level pages

• • Jit@jit.aber

  

  BBMap/BBTools package: Multipurpose tool designed for converting reads or other nucleotide data between different formats.

  Reformat is a member of the BBMap/BBTools package. It is a multipurpose tool des..."reformat.sh" with "java -ea -Xmx200m /path/to/bbmap/current/ jgi.ReformatReads" for example, java -ea -Xmx200m C:\bbmap\current\ jgi.ReformatReads in...

  2713 days ago

• • Poonam Mahapatra@poonam

  

  BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries

  BBSplit internally uses BBMap to map reads to multiple genomes at once, and d...multiple references simultaneously, using BBMap. The reads go to the bin of t...available here:https://sourceforge.net/projects/bbmap/ The sensitivity can be rais...

  2313 days ago

Wire posts

• • Jit@jit.aber

  

  BBMAP tools descriptions https://github.com/BioInfoTools/BBMap/blob/master/docs/ToolDescriptions.txt

  2629 days ago

• • Jit@jit.aber

  

  #Filter out #reads with #size to discard reads containing many Ns. BBNorm ( https://sourceforge.net/projects/bbmap/ )

  2490 days ago

• +4 more Wire posts

Bio-Scripts

• • Jit@jit.aber

  

  Commandline for paired end reads simulation with BBMap !

  ...git:(main) ✗ /home/urbe/Tools/bbmap/randomreads.sh ref=mixed.fa out=reads_BBMAP250.fq paired interleaved read...x162129m -cp /home/urbe/Tools/bbmap/current/ align2.RandomReads3...ert size=400-600 Wrote reads_BBMAP250.fq Time: 5.722 seconds.

  989 days ago

• • LEGE@lege

  

  Tadpole is 250x faster than SPADes assembler !

  ...ength, but some values are not supported. Specifically, it allows 1-31, multiples of 2 from 32-62, multiples of 3 from 63-93, etc. Please read bbmap/docs/guides/TadpoleGuide.txt...

  975 days ago

• +3 more Bio-Scripts

Tags

• • Jit@jit.aber

  

  reformat.sh in=reads.fq out=highQuality.fq maq=16 (that will throw away all reads with average quality below 16) #Filter #BBMap #Quality

  Tags: Filter, BBMap, Quality

  2157 days ago

• • Poonam Mahapatra@poonam

  

  Convert interleaved to separate files with BBmap. $ reformat.sh in=reads.fq out1=reads_r1.fq out2=reads_r2.fq #interleave #fastq #seperate #reformat #bbmap

  Tags: interleave, fastq, seperate, reformat, bbmap

  2313 days ago

Comments

• • Abhinav@abhinav

  

  Comment on "BBTools for bioinformatician !"

  Latest download link at https://sourceforge.net/projects/bbmap/files/BBMap_38.94.tar.gz More at https://sourceforge.net/projects/bbmap/files/

  917 days ago