Results for "BED files"
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eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially, in-silico modeled...ed as well as the reliability of individual residues. You can submit single PDB files or archives containing a set...2506 days ago
- The Charm City Circleator--or Circleator for short--is...s that it supports, including: GenBank flat files, GFF, FASTA Accepts a nu...SR and TRF output, SAM/BAM files, VCF-encoded SNPs, tab-d...
2505 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output t...2365 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 20...implementations are likely to follow. Tulipseed takes as input alignments files of long reads to sparse short...2354 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data pr...or event level data, and want to jump straight to the getting FASTQ format files from fast5 files you can go straight to the fi...2354 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
This is the c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package contains C++ source code as well as two binary files. The latter were tested under...2354 days ago
MinION_GC: An R script to do some QC on MinION data
Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single, small, .txt summary file....2344 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro supports the main Hi-C protocols, including...2342 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate mu...the simulation as it runs including text and image files. Also included are convenienc...tus and logging information; extract fasta sequence files from the leaf nodes of a comp...2339 days ago
Mugsy: multiple whole genome alignment tool
Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pairwise alignment,...egy from Seqan::TCoffee. Mugsy accepts draft genomes in the form of multi-FASTA files and does not require a refere...2339 days ago
