1985 days ago
genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducib...ad from usual format such as protein table files and blast results, as well as home-made tabular files. Features Linear represen...blast, Mauve, and from user-generated tab files Plot several subsegments of...1984 days ago
PilonGrid: parallel wrapper around the Pilon framework
The distribution is a parallel wrapper around the Pilon framework The pipeline is composed of bash scripts, an example mapping.fofn which shows how to input your fastq files (you give paths to the R1 file), and how to launch the pipeline.1983 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS requires two input files: Draft assembly fasta file Interleaved linked reads file (Barcode sequence expected in the BX tag of the read header or in the form "@readname_barcode" ; Run Long Ranger basic on raw chromium reads to produce this interleaved file)1978 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/bioti...equence and structural data analysis respectively, database downloads files from the other databases such...1978 days ago
Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome assemblies (up to mammalian-size). QUAST-LG is included in the QUAST ...1974 days ago
GenomeView: genome browser and annotation editor
GenomeView is a genome browser and annotation editor that displays reference sequen...lignments and graphs. Most major data formats are supported. Local and internet files can be loaded.This project ha...1963 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
...e linked-visualizations and is able to make many-views from the same primary sequence alignment data which users can uploaded from BAM, BED, GFF and tab-text files. Please check our d...1961 days ago
MCAT: Motif Combining and Association Tool
This is a pipeline for finding motifs in fasta files.It can be run from the command line as follows: usage: orange_pipeline_refine.py [-h] [-w W] [--nmotifs NMOTIFS] [--iter ITER] [-c C][-s...1952 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display results produced...gy Notes 4: 137-138 (2004)] To use the UNIX versions, unzip and untar the files in an appropriate directory u...1881 days ago